RNA–Protein interactions for RNA: ENST00000522556.1

CLK4-211, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 1,249 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-211ENST00000522556 VRK2Q86Y07 508 aa16.04■□□□□ 0.16
CLK4-211ENST00000522556 MCEMP1Q8IX19 187 aa16.04■□□□□ 0.16
CLK4-211ENST00000522556 ARFGAP2Q8N6H7 521 aa16.04■□□□□ 0.16
CLK4-211ENST00000522556 ATP6V1C2Q8NEY4 427 aa16.04■□□□□ 0.16
CLK4-211ENST00000522556 OR10D3Q8NH80 312 aa16.04■□□□□ 0.16
CLK4-211ENST00000522556 TMEM19Q96HH6 336 aa16.04■□□□□ 0.16
CLK4-211ENST00000522556 DNAJB12Q9NXW2 375 aaKnown RBP16.04■□□□□ 0.16
CLK4-211ENST00000522556 P2RX2Q9UBL9 471 aa16.04■□□□□ 0.16
CLK4-211ENST00000522556 LIPT1Q9Y234 373 aa16.04■□□□□ 0.16
CLK4-211ENST00000522556 CENPEQ02224 2701 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 A0A1W2PNV4 684 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 EEF1E1-BLOC1S5C9J1V9 151 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 DVL2O14641 736 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 EEF1E1O43324 174 aaKnown RBP16.03■□□□□ 0.16
CLK4-211ENST00000522556 CXCL13O43927 109 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 TNFSF13O75888 250 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 RCBTB2O95199 551 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 KLK2P20151 261 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 MDH1P40925 334 aaKnown RBP16.03■□□□□ 0.16
CLK4-211ENST00000522556 SESN3P58005 492 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 RAC1P63000 192 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 KCNJ10P78508 379 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 SELPLGQ14242 412 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 SF3B4Q15427 424 aaKnown RBP eCLIP16.03■□□□□ 0.161e-9■■■■□ 25.2
CLK4-211ENST00000522556 PPP4R4Q6NUP7 873 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 ZNF836Q6ZNA1 936 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 EIF3MQ7L2H7 374 aaKnown RBP16.03■□□□□ 0.16
CLK4-211ENST00000522556 TOR1AIP2Q8NFQ8 470 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 WDR60Q8WVS4 1066 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 ZNF317Q96PQ6 595 aaPredicted RBP16.03■□□□□ 0.16
CLK4-211ENST00000522556 TM9SF2Q99805 663 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 SRXN1Q9BYN0 137 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 CCDC134Q9H6E4 229 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 COQ10BQ9H8M1 238 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 RLIMQ9NVW2 624 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 CHST2Q9Y4C5 530 aa16.03■□□□□ 0.16
CLK4-211ENST00000522556 A0A1W2PP18 115 aa16.02■□□□□ 0.16
CLK4-211ENST00000522556 LINC01387J3KSC0 135 aa16.02■□□□□ 0.16
CLK4-211ENST00000522556 ASCL1P50553 236 aa16.02■□□□□ 0.16
CLK4-211ENST00000522556 ANXA11P50995 505 aaKnown RBP16.02■□□□□ 0.16
CLK4-211ENST00000522556 SIRPAP78324 504 aa16.02■□□□□ 0.16
CLK4-211ENST00000522556 CBFBQ13951 182 aa16.02■□□□□ 0.16
CLK4-211ENST00000522556 SLC25A53Q5H9E4 307 aa16.02■□□□□ 0.16
CLK4-211ENST00000522556 MRPL2Q5T653 305 aaKnown RBP16.02■□□□□ 0.16
CLK4-211ENST00000522556 P4HA3Q7Z4N8 544 aa16.02■□□□□ 0.16
CLK4-211ENST00000522556 LILRA2Q8N149 483 aa16.02■□□□□ 0.16
CLK4-211ENST00000522556 OR2V1Q8NHB1 315 aa16.02■□□□□ 0.16
CLK4-211ENST00000522556 DNAJA3Q96EY1 480 aa16.02■□□□□ 0.16
CLK4-211ENST00000522556 KLHL15Q96M94 604 aa16.02■□□□□ 0.16
CLK4-211ENST00000522556 CPPED1Q9BRF8 314 aaPredicted RBP16.02■□□□□ 0.16
CLK4-211ENST00000522556 SIKE1Q9BRV8 207 aa16.02■□□□□ 0.16
CLK4-211ENST00000522556 HHATLQ9HCP6 504 aa16.02■□□□□ 0.16
CLK4-211ENST00000522556 ZNF629Q9UEG4 869 aaPredicted RBP16.02■□□□□ 0.16
CLK4-211ENST00000522556 CLEC4AQ9UMR7 237 aa16.02■□□□□ 0.16
CLK4-211ENST00000522556 SLC35A3Q9Y2D2 325 aa16.02■□□□□ 0.16
CLK4-211ENST00000522556 GPC6Q9Y625 555 aaPredicted RBP16.02■□□□□ 0.16
CLK4-211ENST00000522556 DCHS2Q6V1P9 2916 aa16.01■□□□□ 0.15
CLK4-211ENST00000522556 ITPR2Q14571 2701 aa16.01■□□□□ 0.15
CLK4-211ENST00000522556 A0A1W2PNR3 127 aa16.01■□□□□ 0.15
CLK4-211ENST00000522556 ETV2O00321 342 aaPredicted RBP16.01■□□□□ 0.15
CLK4-211ENST00000522556 FBP2O00757 339 aa16.01■□□□□ 0.15
CLK4-211ENST00000522556 ADAMDEC1O15204 470 aa16.01■□□□□ 0.15
CLK4-211ENST00000522556 TROVE2P10155 538 aaKnown RBP eCLIP16.01■□□□□ 0.15
CLK4-211ENST00000522556 BMP2P12643 396 aa16.01■□□□□ 0.15
CLK4-211ENST00000522556 NID1P14543 1247 aa16.01■□□□□ 0.15
CLK4-211ENST00000522556 ELK4P28324 431 aa16.01■□□□□ 0.15
CLK4-211ENST00000522556 UQCRC1P31930 480 aa16.01■□□□□ 0.15
CLK4-211ENST00000522556 KRTAP10-9P60411 292 aa16.01■□□□□ 0.15
CLK4-211ENST00000522556 TXNL4AP83876 142 aaKnown RBP16.01■□□□□ 0.15
CLK4-211ENST00000522556 SGCBQ16585 318 aa16.01■□□□□ 0.15
CLK4-211ENST00000522556 TMEM176BQ3YBM2 270 aaPredicted RBP16.01■□□□□ 0.15
CLK4-211ENST00000522556 HBMQ6B0K9 141 aa16.01■□□□□ 0.15
CLK4-211ENST00000522556 CHMP1BQ7LBR1 199 aa16.01■□□□□ 0.15
CLK4-211ENST00000522556 LUZP2Q86TE4 346 aa16.01■□□□□ 0.15
CLK4-211ENST00000522556 COMTD1Q86VU5 262 aa16.01■□□□□ 0.15
CLK4-211ENST00000522556 DMRTC2Q8IXT2 367 aaPredicted RBP16.01■□□□□ 0.15
CLK4-211ENST00000522556 MRGPRX4Q96LA9 322 aa16.01■□□□□ 0.15
CLK4-211ENST00000522556 SPOCK3Q9BQ16 436 aa16.01■□□□□ 0.15
CLK4-211ENST00000522556 RNF122Q9H9V4 155 aa16.01■□□□□ 0.15
CLK4-211ENST00000522556 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.01■□□□□ 0.15
CLK4-211ENST00000522556 JKAMPQ9P055 326 aa16.01■□□□□ 0.15
CLK4-211ENST00000522556 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.01■□□□□ 0.15
CLK4-211ENST00000522556 TRIM33Q9UPN9 1127 aa16.01■□□□□ 0.15
CLK4-211ENST00000522556 NAV2Q8IVL1 2488 aa16■□□□□ 0.15
CLK4-211ENST00000522556 GKN3PP0CG01 181 aa16■□□□□ 0.15
CLK4-211ENST00000522556 ARAFP10398 606 aa16■□□□□ 0.15
CLK4-211ENST00000522556 EIF1P41567 113 aaKnown RBP16■□□□□ 0.15
CLK4-211ENST00000522556 KIR2DL2P43627 348 aaPredicted RBP16■□□□□ 0.15
CLK4-211ENST00000522556 ARFIP2P53365 341 aa16■□□□□ 0.15
CLK4-211ENST00000522556 CRISP3P54108 245 aa16■□□□□ 0.15
CLK4-211ENST00000522556 RPS3AP61247 264 aaKnown RBP16■□□□□ 0.15
CLK4-211ENST00000522556 CAPRIN1Q14444 709 aaKnown RBP16■□□□□ 0.15
CLK4-211ENST00000522556 GUSBP1Q15486 140 aa16■□□□□ 0.15
CLK4-211ENST00000522556 ESPNLQ6ZVH7 1005 aa16■□□□□ 0.15
CLK4-211ENST00000522556 PLEKHM3Q6ZWE6 761 aa16■□□□□ 0.15
CLK4-211ENST00000522556 BTLAQ7Z6A9 289 aa16■□□□□ 0.15
CLK4-211ENST00000522556 DHDDSQ86SQ9 333 aa16■□□□□ 0.15
CLK4-211ENST00000522556 CLIP4Q8N3C7 705 aa16■□□□□ 0.15
CLK4-211ENST00000522556 CNEP1R1Q8N9A8 125 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms