RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 IL11P20809 199 aa16.4■□□□□ 0.22
NPHP4-210ENST00000506941 SUCLG1P53597 346 aaKnown RBP16.4■□□□□ 0.22
NPHP4-210ENST00000506941 CLDN20P56880 219 aa16.4■□□□□ 0.22
NPHP4-210ENST00000506941 EEF1A1P68104 462 aaKnown RBP16.4■□□□□ 0.22
NPHP4-210ENST00000506941 PMPCAQ10713 525 aa16.4■□□□□ 0.22
NPHP4-210ENST00000506941 QPRTQ15274 297 aa16.4■□□□□ 0.22
NPHP4-210ENST00000506941 CYP51A1Q16850 503 aa16.4■□□□□ 0.22
NPHP4-210ENST00000506941 REEP3Q6NUK4 255 aa16.4■□□□□ 0.22
NPHP4-210ENST00000506941 MTFR2Q6P444 385 aa16.4■□□□□ 0.22
NPHP4-210ENST00000506941 B3GNT6Q6ZMB0 384 aa16.4■□□□□ 0.22
NPHP4-210ENST00000506941 SEM1Q6ZVN7 128 aa16.4■□□□□ 0.22
NPHP4-210ENST00000506941 ZZZ3Q8IYH5 903 aa16.4■□□□□ 0.22
NPHP4-210ENST00000506941 UBQLNLQ8IYU4 475 aa16.4■□□□□ 0.22
NPHP4-210ENST00000506941 EID3Q8N140 333 aa16.4■□□□□ 0.22
NPHP4-210ENST00000506941 METTL25Q8N6Q8 603 aa16.4■□□□□ 0.22
NPHP4-210ENST00000506941 PCYOX1LQ8NBM8 494 aa16.4■□□□□ 0.22
NPHP4-210ENST00000506941 OR8J3Q8NGG0 315 aa16.4■□□□□ 0.22
NPHP4-210ENST00000506941 OR10A6Q8NH74 314 aa16.4■□□□□ 0.22
NPHP4-210ENST00000506941 TTYH2Q9BSA4 534 aa16.4■□□□□ 0.22
NPHP4-210ENST00000506941 EXOSC3Q9NQT5 275 aaKnown RBP16.4■□□□□ 0.22
NPHP4-210ENST00000506941 RLIMQ9NVW2 624 aa16.4■□□□□ 0.22
NPHP4-210ENST00000506941 ADGRG4Q8IZF6 3080 aa16.4■□□□□ 0.22
NPHP4-210ENST00000506941 CDHR4A6H8M9 788 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 AHRRA9YTQ3 701 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 H0Y3Z8 333 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 LINC01387J3KSC0 135 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 ETV2O00321 342 aaPredicted RBP16.39■□□□□ 0.21
NPHP4-210ENST00000506941 AP3D1O14617 1153 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 FAM107AO95990 144 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 THBS1P07996 1170 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 HOXD4P09016 255 aaPredicted RBP16.39■□□□□ 0.21
NPHP4-210ENST00000506941 PEPDP12955 493 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 ETS2P15036 469 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 SLC6A2P23975 617 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 PTGER4P35408 488 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 CDSNQ15517 529 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 BCL2A1Q16548 175 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 LIN52Q52LA3 116 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 SLC25A53Q5H9E4 307 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 RNF220Q5VTB9 566 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 PLXDC2Q6UX71 529 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 ADGRE4PQ86SQ3 457 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 GGNQ86UU5 652 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 LSRQ86X29 649 aaPredicted RBP16.39■□□□□ 0.21
NPHP4-210ENST00000506941 CALHM3Q86XJ0 350 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 CLIP4Q8N3C7 705 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 FBXO27Q8NI29 283 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 ZPLD1Q8TCW7 415 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 SMPDL3BQ92485 455 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 PIF1Q9H611 641 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 GID8Q9NWU2 228 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 GPC6Q9Y625 555 aaPredicted RBP16.39■□□□□ 0.21
NPHP4-210ENST00000506941 AP4B1Q9Y6B7 739 aa16.39■□□□□ 0.21
NPHP4-210ENST00000506941 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.38■□□□□ 0.21
NPHP4-210ENST00000506941 AIM2O14862 343 aa16.38■□□□□ 0.21
NPHP4-210ENST00000506941 SEC14L5O43304 696 aa16.38■□□□□ 0.21
NPHP4-210ENST00000506941 GCM2O75603 506 aaPredicted RBP16.38■□□□□ 0.21
NPHP4-210ENST00000506941 TOXO94900 526 aa16.38■□□□□ 0.21
NPHP4-210ENST00000506941 EPPINO95925 133 aa16.38■□□□□ 0.21
NPHP4-210ENST00000506941 PABPC4LP0CB38 370 aaKnown RBP16.38■□□□□ 0.21
NPHP4-210ENST00000506941 PGCP20142 388 aa16.38■□□□□ 0.21
NPHP4-210ENST00000506941 SHC1P29353 583 aa16.38■□□□□ 0.21
NPHP4-210ENST00000506941 AQP1P29972 269 aa16.38■□□□□ 0.21
NPHP4-210ENST00000506941 RYKP34925 604 aa16.38■□□□□ 0.21
NPHP4-210ENST00000506941 EIF1P41567 113 aaKnown RBP16.38■□□□□ 0.21
NPHP4-210ENST00000506941 PCBP3P57721 371 aaKnown RBP16.38■□□□□ 0.21
NPHP4-210ENST00000506941 TMEM211Q6ICI0 200 aa16.38■□□□□ 0.21
NPHP4-210ENST00000506941 MRGPRGQ86SM5 289 aa16.38■□□□□ 0.21
NPHP4-210ENST00000506941 SERPINA11Q86U17 422 aa16.38■□□□□ 0.21
NPHP4-210ENST00000506941 COMTD1Q86VU5 262 aa16.38■□□□□ 0.21
NPHP4-210ENST00000506941 C11orf65Q8NCR3 313 aa16.38■□□□□ 0.21
NPHP4-210ENST00000506941 HIPK4Q8NE63 616 aa16.38■□□□□ 0.21
NPHP4-210ENST00000506941 MRGPRX4Q96LA9 322 aa16.38■□□□□ 0.21
NPHP4-210ENST00000506941 PSMG3-AS1Q96PY0 264 aa16.38■□□□□ 0.21
NPHP4-210ENST00000506941 TRIB1Q96RU8 372 aa16.38■□□□□ 0.21
NPHP4-210ENST00000506941 GPATCH1Q9BRR8 931 aaKnown RBP16.38■□□□□ 0.21
NPHP4-210ENST00000506941 TMEM185BQ9H7F4 350 aa16.38■□□□□ 0.21
NPHP4-210ENST00000506941 USP22Q9UPT9 525 aa16.38■□□□□ 0.21
NPHP4-210ENST00000506941 CLCA1A8K7I4 914 aa16.37■□□□□ 0.21
NPHP4-210ENST00000506941 CLDN1O95832 211 aa16.37■□□□□ 0.21
NPHP4-210ENST00000506941 OPN1LWP04000 364 aa16.37■□□□□ 0.21
NPHP4-210ENST00000506941 GKN3PP0CG01 181 aa16.37■□□□□ 0.21
NPHP4-210ENST00000506941 ELK4P28324 431 aa16.37■□□□□ 0.21
NPHP4-210ENST00000506941 PRDX6P30041 224 aa16.37■□□□□ 0.21
NPHP4-210ENST00000506941 SESN3P58005 492 aa16.37■□□□□ 0.21
NPHP4-210ENST00000506941 RBBP4Q09028 425 aa16.37■□□□□ 0.21
NPHP4-210ENST00000506941 LARS2Q15031 903 aaKnown RBP16.37■□□□□ 0.21
NPHP4-210ENST00000506941 ZNF311Q5JNZ3 666 aa16.37■□□□□ 0.21
NPHP4-210ENST00000506941 NSUN5P2Q63ZY6 315 aa16.37■□□□□ 0.21
NPHP4-210ENST00000506941 C8orf82Q6P1X6 216 aaPredicted RBP16.37■□□□□ 0.21
NPHP4-210ENST00000506941 GRAMD2AQ8IUY3 354 aa16.37■□□□□ 0.21
NPHP4-210ENST00000506941 ANKS4BQ8N8V4 417 aa16.37■□□□□ 0.21
NPHP4-210ENST00000506941 ST8SIA1Q92185 356 aa16.37■□□□□ 0.21
NPHP4-210ENST00000506941 SH3GL1Q99961 368 aa16.37■□□□□ 0.21
NPHP4-210ENST00000506941 SPATA9Q9BWV2 254 aa16.37■□□□□ 0.21
NPHP4-210ENST00000506941 CLCF1Q9UBD9 225 aa16.37■□□□□ 0.21
NPHP4-210ENST00000506941 ANGPT4Q9Y264 503 aa16.37■□□□□ 0.21
NPHP4-210ENST00000506941 IFT52Q9Y366 437 aa16.37■□□□□ 0.21
NPHP4-210ENST00000506941 A0A0G2JNJ9 132 aa16.36■□□□□ 0.21
NPHP4-210ENST00000506941 CD8B2A6NJW9 211 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms