RNA–Protein interactions for RNA: ENST00000488801.5

PTCD3-217, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 568 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-217ENST00000488801 NUP107P57740 925 aa16.83■□□□□ 0.28
PTCD3-217ENST00000488801 CDK6Q00534 326 aa16.83■□□□□ 0.28
PTCD3-217ENST00000488801 FOXF1Q12946 379 aa16.83■□□□□ 0.28
PTCD3-217ENST00000488801 CBFBQ13951 182 aa16.83■□□□□ 0.28
PTCD3-217ENST00000488801 LIN52Q52LA3 116 aa16.83■□□□□ 0.28
PTCD3-217ENST00000488801 REEP3Q6NUK4 255 aa16.83■□□□□ 0.28
PTCD3-217ENST00000488801 B3GNT6Q6ZMB0 384 aa16.83■□□□□ 0.28
PTCD3-217ENST00000488801 GGNQ86UU5 652 aa16.83■□□□□ 0.28
PTCD3-217ENST00000488801 ZZZ3Q8IYH5 903 aa16.83■□□□□ 0.28
PTCD3-217ENST00000488801 PCYOX1LQ8NBM8 494 aa16.83■□□□□ 0.28
PTCD3-217ENST00000488801 OR5M1Q8NGP8 315 aa16.83■□□□□ 0.28
PTCD3-217ENST00000488801 NFKBIDQ8NI38 313 aa16.83■□□□□ 0.28
PTCD3-217ENST00000488801 ST8SIA1Q92185 356 aa16.83■□□□□ 0.28
PTCD3-217ENST00000488801 CNOT9Q92600 299 aaKnown RBP16.83■□□□□ 0.28
PTCD3-217ENST00000488801 ADGRG7Q96K78 797 aa16.83■□□□□ 0.28
PTCD3-217ENST00000488801 CCT8L2Q96SF2 557 aa16.83■□□□□ 0.28
PTCD3-217ENST00000488801 GPATCH1Q9BRR8 931 aaKnown RBP16.83■□□□□ 0.28
PTCD3-217ENST00000488801 TTYH2Q9BSA4 534 aa16.83■□□□□ 0.28
PTCD3-217ENST00000488801 CLCF1Q9UBD9 225 aa16.83■□□□□ 0.28
PTCD3-217ENST00000488801 ZNF443Q9Y2A4 671 aaPredicted RBP16.83■□□□□ 0.28
PTCD3-217ENST00000488801 ARL2BPQ9Y2Y0 163 aa16.83■□□□□ 0.28
PTCD3-217ENST00000488801 GPC6Q9Y625 555 aaPredicted RBP16.83■□□□□ 0.28
PTCD3-217ENST00000488801 AP4B1Q9Y6B7 739 aa16.83■□□□□ 0.28
PTCD3-217ENST00000488801 NBPF19A0A087WUL8 3843 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 TMEM247A6NEH6 219 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 CD8B2A6NJW9 211 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 FAAHO00519 579 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 EFNA2O43921 213 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 EPPINO95925 133 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 PABPC4LP0CB38 370 aaKnown RBP16.82■□□□□ 0.28
PTCD3-217ENST00000488801 GLI4P10075 376 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 SLC6A2P23975 617 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 PRDX6P30041 224 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 EIF1P41567 113 aaKnown RBP16.82■□□□□ 0.28
PTCD3-217ENST00000488801 RBBP4Q09028 425 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 SCARB2Q14108 478 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 CTU2Q2VPK5 515 aaKnown RBP16.82■□□□□ 0.28
PTCD3-217ENST00000488801 MMEL1Q495T6 779 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 RABL3Q5HYI8 236 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 NSUN5P2Q63ZY6 315 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 HACD2Q6Y1H2 254 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 VRK2Q86Y07 508 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 ZNF808Q8N4W9 903 aaPredicted RBP16.82■□□□□ 0.28
PTCD3-217ENST00000488801 OR52P1PQ8NH57 321 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 MRGPRX4Q96LA9 322 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 RNF145Q96MT1 663 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 TUBA1CQ9BQE3 449 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 THUMPD3Q9BV44 507 aaKnown RBP16.82■□□□□ 0.28
PTCD3-217ENST00000488801 SPATA9Q9BWV2 254 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 ADAM21Q9UKJ8 722 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 CAMK2AQ9UQM7 478 aa16.82■□□□□ 0.28
PTCD3-217ENST00000488801 MBD3L4A6NDZ8 208 aaPredicted RBP16.81■□□□□ 0.28
PTCD3-217ENST00000488801 MBD3L3A6NE82 208 aaPredicted RBP16.81■□□□□ 0.28
PTCD3-217ENST00000488801 MBD3L5A6NJ08 208 aaPredicted RBP16.81■□□□□ 0.28
PTCD3-217ENST00000488801 GCM2O75603 506 aaPredicted RBP16.81■□□□□ 0.28
PTCD3-217ENST00000488801 TOXO94900 526 aa16.81■□□□□ 0.28
PTCD3-217ENST00000488801 ESRRAP11474 423 aaPredicted RBP16.81■□□□□ 0.28
PTCD3-217ENST00000488801 IL7RP16871 459 aa16.81■□□□□ 0.28
PTCD3-217ENST00000488801 POU3F2P20265 443 aaPredicted RBP16.81■□□□□ 0.28
PTCD3-217ENST00000488801 SUCLG1P53597 346 aaKnown RBP16.81■□□□□ 0.28
PTCD3-217ENST00000488801 QPRTQ15274 297 aa16.81■□□□□ 0.28
PTCD3-217ENST00000488801 ZSWIM7Q19AV6 140 aa16.81■□□□□ 0.28
PTCD3-217ENST00000488801 TMEM211Q6ICI0 200 aa16.81■□□□□ 0.28
PTCD3-217ENST00000488801 LACC1Q8IV20 430 aa16.81■□□□□ 0.28
PTCD3-217ENST00000488801 TMCO5AQ8N6Q1 288 aa16.81■□□□□ 0.28
PTCD3-217ENST00000488801 C11orf65Q8NCR3 313 aa16.81■□□□□ 0.28
PTCD3-217ENST00000488801 HIPK4Q8NE63 616 aa16.81■□□□□ 0.28
PTCD3-217ENST00000488801 MBD3L2Q8NHZ7 208 aaPredicted RBP16.81■□□□□ 0.28
PTCD3-217ENST00000488801 SLC35B4Q969S0 331 aa16.81■□□□□ 0.28
PTCD3-217ENST00000488801 IFT52Q9Y366 437 aa16.81■□□□□ 0.28
PTCD3-217ENST00000488801 FAM47E-STBD1D6RA91 191 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 H3BML4 177 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 PGCP20142 388 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 IL11P20809 199 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 CEACAM8P31997 349 aaPredicted RBP16.8■□□□□ 0.28
PTCD3-217ENST00000488801 PCGF2P35227 344 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 TIMP3P35625 211 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 SLC6A8P48029 635 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 CCR4P51679 360 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 CLDN20P56880 219 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 RAC1P63000 192 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 EPS8Q12929 822 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 SF3B4Q15427 424 aaKnown RBP eCLIP16.8■□□□□ 0.282e-6■■■□□ 18.7
PTCD3-217ENST00000488801 CDSNQ15517 529 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 CYP51A1Q16850 503 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 RIPPLY2Q5TAB7 128 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 DHRS4L2Q6PKH6 230 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 COMTD1Q86VU5 262 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 OR10A6Q8NH74 314 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 FBXO27Q8NI29 283 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 SH3GL1Q99961 368 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 CALHM2Q9HA72 323 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 ACER3Q9NUN7 267 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 GID8Q9NWU2 228 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 PRDM4Q9UKN5 801 aa16.8■□□□□ 0.28
PTCD3-217ENST00000488801 CLCA1A8K7I4 914 aa16.79■□□□□ 0.28
PTCD3-217ENST00000488801 C5orf58C9J3I9 102 aa16.79■□□□□ 0.28
PTCD3-217ENST00000488801 H0Y3Z8 333 aa16.79■□□□□ 0.28
PTCD3-217ENST00000488801 H0YC42 278 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms