RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 CCDC106Q9BWC9 280 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 RLIMQ9NVW2 624 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 DNAJB12Q9NXW2 375 aaKnown RBP12.05□□□□□ -0.48
VPS28-201ENST00000292510 FAM53CQ9NYF3 392 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 COQ3Q9NZJ6 369 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 PLEKHB1Q9UF11 243 aaPredicted RBP12.05□□□□□ -0.48
VPS28-201ENST00000292510 Q9UFV3 132 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 CORO2BQ9UQ03 480 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 ZNF443Q9Y2A4 671 aaPredicted RBP12.05□□□□□ -0.48
VPS28-201ENST00000292510 HEATR5AQ86XA9 2040 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 PHF3Q92576 2039 aaKnown RBP12.04□□□□□ -0.48
VPS28-201ENST00000292510 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 FAM90A27PA6NNH2 459 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 BBIP1A8MTZ0 92 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 LINC01387J3KSC0 135 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 AP3D1O14617 1153 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 SLC22A2O15244 555 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 DNAJA2O60884 412 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 PGM3O95394 542 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 COX4I1P13073 169 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 NID1P14543 1247 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 SHC1P29353 583 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 SESN3P58005 492 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 CDK6Q00534 326 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 SCARB2Q14108 478 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 GNA13Q14344 377 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 LIN52Q52LA3 116 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 RABL3Q5HYI8 236 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 COQ5Q5HYK3 327 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 RIPPLY2Q5TAB7 128 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 NANOGP8Q6NSW7 305 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 XKRXQ6PP77 449 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 MAMDC2Q7Z304 686 aaPredicted RBP12.04□□□□□ -0.48
VPS28-201ENST00000292510 ADGRE4PQ86SQ3 457 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 PTOV1Q86YD1 416 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 LACC1Q8IV20 430 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 CLIP4Q8N3C7 705 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 MEIOBQ8N635 442 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 C9orf106Q8NAJ2 232 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 BBS10Q8TAM1 723 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 PMM1Q92871 262 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 LRRC58Q96CX6 371 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 RCN3Q96D15 328 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 ZNF845Q96IR2 970 aaPredicted RBP12.04□□□□□ -0.48
VPS28-201ENST00000292510 RSPO3Q9BXY4 272 aaPredicted RBP12.04□□□□□ -0.48
VPS28-201ENST00000292510 UCK2Q9BZX2 261 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 MYLK2Q9H1R3 596 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 PIF1Q9H611 641 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 NANOGQ9H9S0 305 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 BCL2L10Q9HD36 194 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 CHST2Q9Y4C5 530 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 AP4B1Q9Y6B7 739 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 ADGRG4Q8IZF6 3080 aa12.04□□□□□ -0.48
VPS28-201ENST00000292510 CD8B2A6NJW9 211 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 EIF1AYO14602 144 aaKnown RBP12.03□□□□□ -0.48
VPS28-201ENST00000292510 CLDN14O95500 239 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 NTN1O95631 604 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 TGM6O95932 706 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 PABPC4LP0CB38 370 aaKnown RBP12.03□□□□□ -0.48
VPS28-201ENST00000292510 GKN3PP0CG01 181 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 PGCP20142 388 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 AGAP20933 346 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 GRNP28799 593 aaKnown RBP12.03□□□□□ -0.48
VPS28-201ENST00000292510 AQP1P29972 269 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 CHRNB4P30926 498 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 SFTPDP35247 375 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 EIF1P41567 113 aaKnown RBP12.03□□□□□ -0.48
VPS28-201ENST00000292510 RAC1P63000 192 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 EEF1A1P68104 462 aaKnown RBP12.03□□□□□ -0.48
VPS28-201ENST00000292510 SF3B4Q15427 424 aaKnown RBP eCLIP12.03□□□□□ -0.486e-8■■■■■ 27
VPS28-201ENST00000292510 CYP51A1Q16850 503 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 SLC25A53Q5H9E4 307 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 POMZP3Q6PJE2 187 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 LIX1LQ8IVB5 337 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 CMIPQ8IY22 773 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 ATP6V1C2Q8NEY4 427 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 OR10A6Q8NH74 314 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 ZNF563Q8TA94 476 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 CA5BP1Q8WTZ4 195 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 FIG4Q92562 907 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 MRGPRX4Q96LA9 322 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 PINK1Q9BXM7 581 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 TMEM38AQ9H6F2 299 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 KAT8Q9H7Z6 458 aaKnown RBP12.03□□□□□ -0.48
VPS28-201ENST00000292510 CALHM2Q9HA72 323 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 EXOSC3Q9NQT5 275 aaKnown RBP12.03□□□□□ -0.48
VPS28-201ENST00000292510 CLCF1Q9UBD9 225 aa12.03□□□□□ -0.48
VPS28-201ENST00000292510 GPC6Q9Y625 555 aaPredicted RBP12.03□□□□□ -0.48
VPS28-201ENST00000292510 A0A0J9YW62 118 aa12.02□□□□□ -0.49
VPS28-201ENST00000292510 CDHR4A6H8M9 788 aa12.02□□□□□ -0.49
VPS28-201ENST00000292510 NKX2-6A6NCS4 301 aa12.02□□□□□ -0.49
VPS28-201ENST00000292510 MBD3L4A6NDZ8 208 aaPredicted RBP12.02□□□□□ -0.49
VPS28-201ENST00000292510 MBD3L3A6NE82 208 aaPredicted RBP12.02□□□□□ -0.49
VPS28-201ENST00000292510 MBD3L5A6NJ08 208 aaPredicted RBP12.02□□□□□ -0.49
VPS28-201ENST00000292510 PRSS44E7EML9 344 aa12.02□□□□□ -0.49
VPS28-201ENST00000292510 ETV2O00321 342 aaPredicted RBP12.02□□□□□ -0.49
VPS28-201ENST00000292510 TNFSF11O14788 317 aa12.02□□□□□ -0.49
VPS28-201ENST00000292510 AIM2O14862 343 aa12.02□□□□□ -0.49
VPS28-201ENST00000292510 FRS3O43559 492 aa12.02□□□□□ -0.49
VPS28-201ENST00000292510 THBS1P07996 1170 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms