RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 SAXO2Q658L1 398 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 BHLHB9Q6PI77 547 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 PAMR1Q6UXH9 720 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 OLIG3Q7RTU3 272 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 ANKRD46Q86W74 232 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 KIRREL3Q8IZU9 778 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 LILRA2Q8N149 483 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 TLCD1Q96CP7 247 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 GMPPAQ96IJ6 420 aaPredicted RBP13.31□□□□□ -0.28
CLN3-213ENST00000565047 MAELQ96JY0 434 aaKnown RBP13.31□□□□□ -0.28
CLN3-213ENST00000565047 DPY30Q9C005 99 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 SAP130Q9H0E3 1048 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 CENPHQ9H3R5 247 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 PAQR5Q9NXK6 330 aaPredicted RBP13.31□□□□□ -0.28
CLN3-213ENST00000565047 PLEKHA6Q9Y2H5 1048 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 GPR45Q9Y5Y3 372 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 ITPR3Q14573 2671 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 MED13LQ71F56 2210 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 DUXAA6NLW8 204 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 ZNF195O14628 629 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 EIF4E2O60573 245 aaKnown RBP13.3□□□□□ -0.28
CLN3-213ENST00000565047 BCAS1O75363 584 aaPredicted RBP13.3□□□□□ -0.28
CLN3-213ENST00000565047 FCGR2AP12318 317 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 UQCRC2P22695 453 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 LOXP28300 417 aaPredicted RBP13.3□□□□□ -0.28
CLN3-213ENST00000565047 ELK4P28324 431 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 CPOXP36551 454 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 FGFBP1Q14512 234 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 SGCBQ16585 318 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 PDZK1Q5T2W1 519 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 ZNF527Q8NB42 609 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 OR5W2Q8NH69 310 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 FBXO27Q8NI29 283 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 OSTF1Q92882 214 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 ZG16BQ96DA0 208 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 NEURL3Q96EH8 262 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 CHMP6Q96FZ7 201 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 KLHL15Q96M94 604 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 TMUB1Q9BVT8 246 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 OR51I1Q9H343 314 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 TMEM185BQ9H7F4 350 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 AIG1Q9NVV5 245 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 THAP1Q9NVV9 213 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 STOML1Q9UBI4 398 aa13.3□□□□□ -0.28
CLN3-213ENST00000565047 GPC6Q9Y625 555 aaPredicted RBP13.3□□□□□ -0.28
CLN3-213ENST00000565047 SERINC4A6NH21 518 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 E9PBE3 544 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 AK1P00568 194 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 SOAT1P35610 550 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 CASP9P55211 416 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 UFM1P61960 85 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 SKP2Q13309 424 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 ZNF239Q16600 458 aaKnown RBP13.29□□□□□ -0.28
CLN3-213ENST00000565047 ANXA8L1Q5VT79 327 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 HBMQ6B0K9 141 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 TYW3Q6IPR3 259 aaKnown RBP13.29□□□□□ -0.28
CLN3-213ENST00000565047 MAVSQ7Z434 540 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 ANKRD42Q8N9B4 389 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 FAM71CQ8NEG0 241 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 OR4A15Q8NGL6 344 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 OR6K3Q8NGY3 331 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 RNF128Q8TEB7 428 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 SLC35G5Q96KT7 338 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 CCDC115Q96NT0 180 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 SRXN1Q9BYN0 137 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 LAT2Q9GZY6 243 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 COQ10BQ9H8M1 238 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 TMBIM4Q9HC24 238 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 KLHL28Q9NXS3 571 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 NDRG3Q9UGV2 375 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 BTNL2Q9UIR0 455 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 ING1Q9UK53 422 aaPredicted RBP13.29□□□□□ -0.28
CLN3-213ENST00000565047 MKLN1Q9UL63 735 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 CLEC4AQ9UMR7 237 aa13.29□□□□□ -0.28
CLN3-213ENST00000565047 C16orf97H3BN30 126 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 H3BNH8 94 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 HDAC3O15379 428 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 ZNF264O43296 627 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 KIAA0513O60268 411 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 STX11O75558 287 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 THBDP07204 575 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 OR12D1P0DN82 309 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 POU2F1P14859 743 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 CD53P19397 219 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 CRYGSP22914 178 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 EPHA3P29320 983 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 PGM1P36871 562 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 CLNS1AP54105 237 aaKnown RBP13.28□□□□□ -0.28
CLN3-213ENST00000565047 CARD18P57730 90 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 GPR68Q15743 365 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 DPY19L1Q2PZI1 675 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 FAM174BQ3ZCQ3 159 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 HHATQ5VTY9 493 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 STAC2Q6ZMT1 411 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 SPATA19Q7Z5L4 167 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 TOR1AIP2Q8NFQ8 470 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 RAB3IL1Q8TBN0 382 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 MRGPRX4Q96LA9 322 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 ALPK1Q96QP1 1244 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 PAIP2Q9BPZ3 127 aaKnown RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms