RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 EFNA2O43921 213 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 SMIM24O75264 130 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 RGS9O75916 674 aaPredicted RBP6.43□□□□□ -1.38
VPS4A-203ENST00000564399 SLITRK5O94991 958 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 OR4F21O95013 312 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 IGHV3-9P01782 118 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 KRT6AP02538 564 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 KRT6BP04259 564 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 GSTA2P09210 222 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 RBP1P09455 135 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 LINGO3P0C6S8 592 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 NPIPA8P0DM63 369 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 HSD3B1P14060 373 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 CHN1P15882 459 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 COX5AP20674 150 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 HSD3B2P26439 372 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 APEX1P27695 318 aaKnown RBP6.43□□□□□ -1.38
VPS4A-203ENST00000564399 ELK4P28324 431 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 TYK2P29597 1187 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 NTSP30990 170 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 KRT6CP48668 564 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 PRIM2P49643 509 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 COMPP49747 757 aaPredicted RBP6.43□□□□□ -1.38
VPS4A-203ENST00000564399 CDH13P55290 713 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 RAC3P60763 192 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 SNRPD2P62316 118 aaKnown RBP6.43□□□□□ -1.38
VPS4A-203ENST00000564399 PHC1P78364 1004 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 RAE1P78406 368 aaKnown RBP6.43□□□□□ -1.38
VPS4A-203ENST00000564399 DEFA6Q01524 100 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 BTKQ06187 659 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 C2orf80Q0P641 193 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 CALCOCO2Q13137 446 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 UAP1Q16222 522 aaPredicted RBP6.43□□□□□ -1.38
VPS4A-203ENST00000564399 VPS26BQ4G0F5 336 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 GLE1Q53GS7 698 aaKnown RBP6.43□□□□□ -1.38
VPS4A-203ENST00000564399 TECRLQ5HYJ1 363 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 LETMD1Q6P1Q0 360 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 SLC46A3Q7Z3Q1 461 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 GALNT5Q7Z7M9 940 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 OR2L13Q8N349 312 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 ANKS4BQ8N8V4 417 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 LINC01356Q8N9X3 169 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 FBF1Q8TES7 1133 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 ZFP90Q8TF47 636 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 ELP4Q96EB1 424 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 GPR78Q96P69 363 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 ZNF300Q96RE9 604 aaPredicted RBP6.43□□□□□ -1.38
VPS4A-203ENST00000564399 SHCBP1LQ9BZQ2 653 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 GLIPR2Q9H4G4 154 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 COQ10BQ9H8M1 238 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 BCO1Q9HAY6 547 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 MYOZ1Q9NP98 299 aaPredicted RBP6.43□□□□□ -1.38
VPS4A-203ENST00000564399 MIEF1Q9NQG6 463 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 TMCO1Q9UM00 188 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 TRAF6Q9Y4K3 522 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 SLC25A15Q9Y619 301 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 TMEM89A2RUT3 159 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 ZNF724A8MTY0 619 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 ATP6V1G2-DDX39BF2Z307 99 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 ULK1O75385 1050 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 SNUPNO95149 360 aaKnown RBP6.42□□□□□ -1.38
VPS4A-203ENST00000564399 PSMG1O95456 288 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 NGFRP08138 427 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 ANXA4P09525 319 aaPredicted RBP6.42□□□□□ -1.38
VPS4A-203ENST00000564399 PRPS2P11908 318 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 DDCP20711 480 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 PCMT1P22061 227 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 HMOX2P30519 316 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 TIA1P31483 386 aaKnown RBP eCLIP6.42□□□□□ -1.38
VPS4A-203ENST00000564399 STX2P32856 288 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 CHN2P52757 468 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 PRKAG1P54619 331 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 NAB1Q13506 487 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 PRSS53Q2L4Q9 553 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 SPIN4Q56A73 249 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 FBXW9Q5XUX1 488 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 SZRD1Q7Z422 152 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 MISPQ8IVT2 679 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 PLD6Q8N2A8 252 aaKnown RBP6.42□□□□□ -1.38
VPS4A-203ENST00000564399 TOR1AIP2Q8NFQ8 470 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 SEMA6DQ8NFY4 1073 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 OR6Y1Q8NGX8 325 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 FBXO30Q8TB52 745 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 PHOSPHO1Q8TCT1 267 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 ZNF418Q8TF45 676 aaPredicted RBP6.42□□□□□ -1.38
VPS4A-203ENST00000564399 APIPQ96GX9 242 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 AMDHD1Q96NU7 426 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 DPH5Q9H2P9 285 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 ANKZF1Q9H8Y5 726 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 UBQLN4Q9NRR5 601 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 ING1Q9UK53 422 aaPredicted RBP6.42□□□□□ -1.38
VPS4A-203ENST00000564399 GRID1Q9ULK0 1009 aa6.42□□□□□ -1.38
VPS4A-203ENST00000564399 FAM157AC9JC47 383 aa6.41□□□□□ -1.38
VPS4A-203ENST00000564399 TRIM77I1YAP6 450 aa6.41□□□□□ -1.38
VPS4A-203ENST00000564399 KIF2AO00139 706 aaPredicted RBP6.41□□□□□ -1.38
VPS4A-203ENST00000564399 GTPBP1O00178 669 aaKnown RBP6.41□□□□□ -1.38
VPS4A-203ENST00000564399 CYTIPO60759 359 aa6.41□□□□□ -1.38
VPS4A-203ENST00000564399 KCNK2O95069 426 aa6.41□□□□□ -1.38
VPS4A-203ENST00000564399 NKX2-2O95096 273 aa6.41□□□□□ -1.38
VPS4A-203ENST00000564399 RPS17P08708 135 aaKnown RBP6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms