RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 POLR1CO15160 346 aaPredicted RBP11.71□□□□□ -0.54
SHMT2-229ENST00000557348 XPNPEP2O43895 674 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 WBP4O75554 376 aaKnown RBP11.71□□□□□ -0.54
SHMT2-229ENST00000557348 ZIC2O95409 532 aaPredicted RBP11.71□□□□□ -0.54
SHMT2-229ENST00000557348 CDK1P06493 297 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 SYPP08247 313 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 HBQ1P09105 142 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 TNNI3P19429 210 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 NR4A1P22736 598 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 HLA-DMAP28067 261 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 FMO3P31513 532 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 STAT5AP42229 794 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 P2RX3P56373 397 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 DCAF7P61962 342 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 PSG6Q00889 435 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 TSPAN31Q12999 210 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 ZNF267Q14586 743 aaPredicted RBP11.71□□□□□ -0.54
SHMT2-229ENST00000557348 ELAVL1Q15717 326 aaKnown RBP11.71□□□□□ -0.54
SHMT2-229ENST00000557348 TIGD6Q17RP2 521 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 FAM209AQ5JX71 171 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 MEDAGQ5VYS4 303 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 WDR53Q7Z5U6 358 aaPredicted RBP11.71□□□□□ -0.54
SHMT2-229ENST00000557348 COMTD1Q86VU5 262 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 BPHLQ86WA6 291 aaPredicted RBP11.71□□□□□ -0.54
SHMT2-229ENST00000557348 CCDC71Q8IV32 467 aaPredicted RBP11.71□□□□□ -0.54
SHMT2-229ENST00000557348 SLITRK4Q8IW52 837 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 ZNF440Q8IYI8 595 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 TCTE3Q8IZS6 198 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 CLIP4Q8N3C7 705 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 PSD4Q8NDX1 1056 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 OR8J1Q8NGP2 316 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 SGCDQ92629 289 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 ZNF501Q96CX3 271 aaPredicted RBP11.71□□□□□ -0.54
SHMT2-229ENST00000557348 SLC41A3Q96GZ6 507 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 ST6GAL2Q96JF0 529 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 HS6ST2Q96MM7 605 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 PTCHD1Q96NR3 888 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 SLC46A1Q96NT5 459 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 RBCK1Q9BYM8 510 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 C6orf62Q9GZU0 229 aaPredicted RBP11.71□□□□□ -0.54
SHMT2-229ENST00000557348 OR10A5Q9H207 317 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 LANCL2Q9NS86 450 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 DDX28Q9NUL7 540 aaKnown RBP11.71□□□□□ -0.54
SHMT2-229ENST00000557348 REV1Q9UBZ9 1251 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 TMEM5Q9Y2B1 443 aa11.71□□□□□ -0.54
SHMT2-229ENST00000557348 IGKV3D-11A0A0A0MRZ8 115 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 TMCC2O75069 709 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 CFIP05156 583 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 POU2F1P14859 743 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 GABRB1P18505 474 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 ALAS2P22557 587 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 FPR3P25089 353 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 SMSP52788 366 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 CFHR1Q03591 330 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 KCNAB1Q14722 419 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 ZNF141Q15928 474 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.7□□□□□ -0.54
SHMT2-229ENST00000557348 TMEM44Q2T9K0 475 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 SNAP47Q5SQN1 464 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 SLC25A30Q5SVS4 291 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 MRPL2Q5T653 305 aaKnown RBP11.7□□□□□ -0.54
SHMT2-229ENST00000557348 C12orf73Q69YU5 71 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 ZNF613Q6PF04 617 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 IDO2Q6ZQW0 420 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 PTCHD4Q6ZW05 846 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 MBOAT2Q6ZWT7 520 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 ZNF550Q7Z398 422 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 NOXA1Q86UR1 476 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 CCDC28AQ8IWP9 274 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 CLDN22Q8N7P3 220 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 TEX47Q8TBZ9 253 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 APH1BQ8WW43 257 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 DAZLQ92904 295 aaKnown RBP11.7□□□□□ -0.54
SHMT2-229ENST00000557348 ZG16BQ96DA0 208 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 CEP19Q96LK0 163 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 PHOX2BQ99453 314 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 COPS4Q9BT78 406 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 CNPPD1Q9BV87 410 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 GAREM1Q9H706 876 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 C12orf10Q9HB07 376 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 SLC25A19Q9HC21 320 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 SLC6A14Q9UN76 642 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 CLDN16Q9Y5I7 305 aa11.7□□□□□ -0.54
SHMT2-229ENST00000557348 A0A087WUU8 490 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 IRGMA1A4Y4 181 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 CPSF4LA6NMK7 179 aaKnown RBP11.69□□□□□ -0.54
SHMT2-229ENST00000557348 C17orf105B2RV13 164 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 TGFBR3LH3BV60 316 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 SHOXO15266 292 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 CDC123O75794 336 aaPredicted RBP11.69□□□□□ -0.54
SHMT2-229ENST00000557348 FADS2O95864 444 aaKnown RBP11.69□□□□□ -0.54
SHMT2-229ENST00000557348 CYC1P08574 325 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 PIPP12273 146 aaPredicted RBP11.69□□□□□ -0.54
SHMT2-229ENST00000557348 IL7P13232 177 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 FOLR1P15328 257 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 MAOAP21397 527 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 DRD5P21918 477 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 MMP11P24347 488 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 POU1F1P28069 291 aa11.69□□□□□ -0.54
SHMT2-229ENST00000557348 RORAP35398 523 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms