RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 RGS14O43566 566 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 NKX2-2O95096 273 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 BMP4P12644 408 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 HPGDP15428 266 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 COX5AP20674 150 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 ELK4P28324 431 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 NTSP30990 170 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 GUCY2DQ02846 1103 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 CHRNB3Q05901 458 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 RASGEF1BQ0VAM2 473 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 CD226Q15762 336 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 ARL13AQ5H913 290 aaPredicted RBP14.23□□□□□ -0.13
USP48-210ENST00000489108 FAM71E1Q6IPT2 247 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 KLHL17Q6TDP4 642 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 FBXO27Q8NI29 283 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 METTL6Q8TCB7 284 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 ZFP90Q8TF47 636 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 ZNF75CPQ92670 426 aaPredicted RBP14.23□□□□□ -0.13
USP48-210ENST00000489108 PIMREGQ9BSJ6 248 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 INPP5KQ9BT40 448 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 SOX7Q9BT81 388 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 C1QTNF6Q9BXI9 259 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 C1QTNF3Q9BXJ4 246 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 MIEF1Q9NQG6 463 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 UBQLN4Q9NRR5 601 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 SLC25A15Q9Y619 301 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 ATP23Q9Y6H3 246 aa14.23□□□□□ -0.13
USP48-210ENST00000489108 A0A1W2PNR3 127 aa14.22□□□□□ -0.13
USP48-210ENST00000489108 FAM187AA6NFU0 413 aa14.22□□□□□ -0.13
USP48-210ENST00000489108 M0R1B8 84 aa14.22□□□□□ -0.13
USP48-210ENST00000489108 RAD51DO75771 328 aa14.22□□□□□ -0.13
USP48-210ENST00000489108 KCNK2O95069 426 aa14.22□□□□□ -0.13
USP48-210ENST00000489108 SBK3P0C264 359 aa14.22□□□□□ -0.13
USP48-210ENST00000489108 PRPS2P11908 318 aa14.22□□□□□ -0.13
USP48-210ENST00000489108 HMOX2P30519 316 aa14.22□□□□□ -0.13
USP48-210ENST00000489108 PAFAH1B1P43034 410 aa14.22□□□□□ -0.13
USP48-210ENST00000489108 RASA2Q15283 850 aa14.22□□□□□ -0.13
USP48-210ENST00000489108 FAM174BQ3ZCQ3 159 aa14.22□□□□□ -0.13
USP48-210ENST00000489108 IQCCQ4KMZ1 466 aa14.22□□□□□ -0.13
USP48-210ENST00000489108 ZNF551Q7Z340 670 aaPredicted RBP14.22□□□□□ -0.13
USP48-210ENST00000489108 MISPQ8IVT2 679 aa14.22□□□□□ -0.13
USP48-210ENST00000489108 ZNF100Q8IYN0 542 aa14.22□□□□□ -0.13
USP48-210ENST00000489108 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.22□□□□□ -0.13
USP48-210ENST00000489108 HOXB13Q92826 284 aaPredicted RBP14.22□□□□□ -0.13
USP48-210ENST00000489108 CIB4A0PJX0 185 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 A8MT66 165 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 NDUFS8O00217 210 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 SCDO00767 359 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 OIP5O43482 229 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 IGHV3-9P01782 118 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 ACP2P11117 423 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 APOBEC3AP31941 199 aaPredicted RBP14.21□□□□□ -0.13
USP48-210ENST00000489108 SRP14P37108 136 aaKnown RBP14.21□□□□□ -0.13
USP48-210ENST00000489108 GSTM5P46439 218 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 PRKAG1P54619 331 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 RAC3P60763 192 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 ZNF117Q03924 483 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 ZNF763Q0D2J5 394 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 TOMM34Q15785 309 aaPredicted RBP14.21□□□□□ -0.13
USP48-210ENST00000489108 CARTPTQ16568 116 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 VPS26BQ4G0F5 336 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 UNC50Q53HI1 259 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 TMEM151AQ8N4L1 468 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 OR6Y1Q8NGX8 325 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 FBXO30Q8TB52 745 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 FBXO25Q8TCJ0 367 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 MRPL57Q9BQC6 102 aaKnown RBP14.21□□□□□ -0.13
USP48-210ENST00000489108 SIRT5Q9NXA8 310 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 NTMQ9P121 344 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 TIMM22Q9Y584 194 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 SAR1BQ9Y6B6 198 aa14.21□□□□□ -0.13
USP48-210ENST00000489108 A0A1W2PQD3 144 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 CCT8L1PA6NM43 557 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 ZNF724A8MTY0 619 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 SMAD9O15198 467 aaKnown RBP14.2□□□□□ -0.14
USP48-210ENST00000489108 RAD51CO43502 376 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 CYTIPO60759 359 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 SUPT7LO94864 414 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 NUDT14O95848 222 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 MAGEA12P43365 314 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 RNF144AP50876 292 aaPredicted RBP14.2□□□□□ -0.14
USP48-210ENST00000489108 HSPB3Q12988 150 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 TSNAXIP1Q2TAA8 658 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 MST1LQ2TV78 715 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 SPDYAQ5MJ70 313 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 CCNJQ5T5M9 372 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 CBLN3Q6UW01 205 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 GPRIN3Q6ZVF9 776 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 GALNT5Q7Z7M9 940 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 UBE2J2Q8N2K1 259 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 CDRT4Q8N9R6 151 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 SLC16A11Q8NCK7 471 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 PHOSPHO1Q8TCT1 267 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 ZNF524Q96C55 264 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 SORCS2Q96PQ0 1159 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 MRPL46Q9H2W6 279 aaKnown RBP14.2□□□□□ -0.14
USP48-210ENST00000489108 MYNNQ9NPC7 610 aa14.2□□□□□ -0.14
USP48-210ENST00000489108 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.19□□□□□ -0.14
USP48-210ENST00000489108 LOC390937A0A1W2PQ73 354 aa14.19□□□□□ -0.14
USP48-210ENST00000489108 ZSCAN12O43309 604 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms