RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 MMEL1Q495T6 779 aa13.82□□□□□ -0.2
SDC3-203ENST00000471567 ACSF3Q4G176 576 aaPredicted RBP13.82□□□□□ -0.2
SDC3-203ENST00000471567 GCNT6Q5T4J0 391 aa13.82□□□□□ -0.2
SDC3-203ENST00000471567 FAM71CQ8NEG0 241 aa13.82□□□□□ -0.2
SDC3-203ENST00000471567 GPR119Q8TDV5 335 aa13.82□□□□□ -0.2
SDC3-203ENST00000471567 TMEM19Q96HH6 336 aa13.82□□□□□ -0.2
SDC3-203ENST00000471567 TREX2Q9BQ50 279 aaPredicted RBP13.82□□□□□ -0.2
SDC3-203ENST00000471567 IKZF5Q9H5V7 419 aa13.82□□□□□ -0.2
SDC3-203ENST00000471567 TMEM38AQ9H6F2 299 aa13.82□□□□□ -0.2
SDC3-203ENST00000471567 CALHM2Q9HA72 323 aa13.82□□□□□ -0.2
SDC3-203ENST00000471567 EXOSC3Q9NQT5 275 aaKnown RBP13.82□□□□□ -0.2
SDC3-203ENST00000471567 FAM53CQ9NYF3 392 aa13.82□□□□□ -0.2
SDC3-203ENST00000471567 ZNF337Q9Y3M9 751 aa13.82□□□□□ -0.2
SDC3-203ENST00000471567 GPC6Q9Y625 555 aaPredicted RBP13.82□□□□□ -0.2
SDC3-203ENST00000471567 MED12Q93074 2177 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 LOC100653049A0A140TA62 436 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 CD8B2A6NJW9 211 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 H0Y3Z8 333 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 KRT34O76011 436 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 NUDT14O95848 222 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 UBTFL6P0CB48 400 aaPredicted RBP13.81□□□□□ -0.2
SDC3-203ENST00000471567 ARAFP10398 606 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 NID1P14543 1247 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 IL7RP16871 459 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 POU3F2P20265 443 aaPredicted RBP13.81□□□□□ -0.2
SDC3-203ENST00000471567 PSMA4P25789 261 aaKnown RBP13.81□□□□□ -0.2
SDC3-203ENST00000471567 NUP107P57740 925 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 TRMT5Q32P41 509 aaKnown RBP13.81□□□□□ -0.2
SDC3-203ENST00000471567 NDUFAF6Q330K2 333 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 SLC25A53Q5H9E4 307 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 RIPPLY2Q5TAB7 128 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 NSUN5P2Q63ZY6 315 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 NCCRP1Q6ZVX7 275 aaPredicted RBP13.81□□□□□ -0.2
SDC3-203ENST00000471567 SNX32Q86XE0 403 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 LACC1Q8IV20 430 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 RPRMLQ8N4K4 120 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 MEIOBQ8N635 442 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 TMCO5AQ8N6Q1 288 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 PCYOX1LQ8NBM8 494 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 OR5M1Q8NGP8 315 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 RP9Q8TA86 221 aaKnown RBP13.81□□□□□ -0.2
SDC3-203ENST00000471567 BBS10Q8TAM1 723 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 WDR60Q8WVS4 1066 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 ASB5Q8WWX0 329 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 UCN2Q96RP3 112 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 KLHDC3Q9BQ90 382 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 FAM107BQ9H098 131 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 QRSL1Q9H0R6 528 aaKnown RBP13.81□□□□□ -0.2
SDC3-203ENST00000471567 CACYBPQ9HB71 228 aaKnown RBP13.81□□□□□ -0.2
SDC3-203ENST00000471567 COQ3Q9NZJ6 369 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 ARMCX1Q9P291 453 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 PRDM4Q9UKN5 801 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 ZNF232Q9UNY5 417 aa13.81□□□□□ -0.2
SDC3-203ENST00000471567 PHF3Q92576 2039 aaKnown RBP13.81□□□□□ -0.2
SDC3-203ENST00000471567 NCOA6Q14686 2063 aaPredicted RBP13.81□□□□□ -0.2
SDC3-203ENST00000471567 PCNX1Q96RV3 2341 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 C5orf58C9J3I9 102 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 ETV2O00321 342 aaPredicted RBP13.8□□□□□ -0.2
SDC3-203ENST00000471567 MRASO14807 208 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 CYP7B1O75881 506 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 PGM3O95394 542 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 THBS1P07996 1170 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 ETS2P15036 469 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 PGCP20142 388 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 ELK4P28324 431 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 TIMP3P35625 211 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 SLC6A8P48029 635 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 SRYQ05066 204 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 ART3Q13508 389 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 LARS2Q15031 903 aaKnown RBP13.8□□□□□ -0.2
SDC3-203ENST00000471567 LIN52Q52LA3 116 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 REP15Q6BDI9 236 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 REEP3Q6NUK4 255 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 ADGRE4PQ86SQ3 457 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 MTDHQ86UE4 582 aaKnown RBP13.8□□□□□ -0.2
SDC3-203ENST00000471567 C10orf111Q8N326 155 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 OR52P1PQ8NH57 321 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 POC1BQ8TC44 478 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 MAL2Q969L2 176 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 LRRC58Q96CX6 371 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 MRGPRX4Q96LA9 322 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 RNF145Q96MT1 663 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 SH3GL1Q99961 368 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 TUBA1CQ9BQE3 449 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 THUMPD3Q9BV44 507 aaKnown RBP13.8□□□□□ -0.2
SDC3-203ENST00000471567 CCDC106Q9BWC9 280 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 GID8Q9NWU2 228 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 IFT52Q9Y366 437 aa13.8□□□□□ -0.2
SDC3-203ENST00000471567 USP9YO00507 2555 aaPredicted RBP13.8□□□□□ -0.2
SDC3-203ENST00000471567 SHISA8B8ZZ34 492 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 H3BML4 177 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 NTN1O95631 604 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 PRKCAP17252 672 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 SLC6A2P23975 617 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 CHRNB4P30926 498 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 CCR4P51679 360 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 DLX5P56178 289 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 RAC1P63000 192 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 CDK6Q00534 326 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms