RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 CMIPQ8IY22 773 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 ULK2Q8IYT8 1036 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 TMCO5AQ8N6Q1 288 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 POU5F2Q8N7G0 328 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 TOR1AIP2Q8NFQ8 470 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 GPR119Q8TDV5 335 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 PHF10Q8WUB8 498 aaKnown RBP13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 WDR60Q8WVS4 1066 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 ARSGQ96EG1 525 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 CCT8L2Q96SF2 557 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 SH3GL1Q99961 368 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 TRIM8Q9BZR9 551 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 MYLK2Q9H1R3 596 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 TMEM38AQ9H6F2 299 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 NANOGQ9H9S0 305 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 BCL2L10Q9HD36 194 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 GID8Q9NWU2 228 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 ZNF232Q9UNY5 417 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 ARL2BPQ9Y2Y0 163 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 PCNX1Q96RV3 2341 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 HEATR5AQ86XA9 2040 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 DSPPQ9NZW4 1301 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 C7orf72A4D263 438 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 CLDN24A6NM45 220 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 SHISA8B8ZZ34 492 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 PGM3O95394 542 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 LINGO3P0C6S8 592 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 RNF224P0DH78 156 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 PEPDP12955 493 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 COX4I1P13073 169 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 NID1P14543 1247 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 ZNF17P17021 662 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 SLC6A2P23975 617 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 EIF1P41567 113 aaKnown RBP13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 CCR4P51679 360 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 SRYQ05066 204 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 PMPCAQ10713 525 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 C1orf185Q5T7R7 199 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 RTL6Q6ICC9 239 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 REEP3Q6NUK4 255 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 B3GNT6Q6ZMB0 384 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 NCCRP1Q6ZVX7 275 aaPredicted RBP13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 TREML1Q86YW5 311 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 GTPBP8Q8N3Z3 284 aaPredicted RBP13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 RPRMLQ8N4K4 120 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 FAM71CQ8NEG0 241 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 OR52P1PQ8NH57 321 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 NFKBIDQ8NI38 313 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 BBS10Q8TAM1 723 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 SLC39A3Q9BRY0 314 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 KAT8Q9H7Z6 458 aaKnown RBP13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 CACYBPQ9HB71 228 aaKnown RBP13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 ADAM21Q9UKJ8 722 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 FAM215AQ9Y5M1 114 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 AP4B1Q9Y6B7 739 aa13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 PHF3Q92576 2039 aaKnown RBP13.12□□□□□ -0.31
SQSTM1-205ENST00000464493 H3BML4 177 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 FXYD1O00168 92 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 DNAJA2O60884 412 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 BCAS1O75363 584 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 ETS2P15036 469 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 ZNF708P17019 499 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 POU3F2P20265 443 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 SMSP52788 366 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 CLDN18P56856 261 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 ADORA2A-AS1P86434 159 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 SCARB2Q14108 478 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 LARS2Q15031 903 aaKnown RBP13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 TOMM34Q15785 309 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 CYP51A1Q16850 503 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 LIN52Q52LA3 116 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 RPTNQ6XPR3 784 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 VRK2Q86Y07 508 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 MARVELD2Q8N4S9 558 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 OR8J3Q8NGG0 315 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 OR10A6Q8NH74 314 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 POC1BQ8TC44 478 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 ZPLD1Q8TCW7 415 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 CNOT9Q92600 299 aaKnown RBP13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 RCN3Q96D15 328 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 CMTM5Q96DZ9 223 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 RNF145Q96MT1 663 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 NPAS1Q99742 590 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 TTYH2Q9BSA4 534 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 EFCAB1Q9HAE3 211 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 EXOSC3Q9NQT5 275 aaKnown RBP13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 STOML1Q9UBI4 398 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 IFT52Q9Y366 437 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 GPC6Q9Y625 555 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 DOPEY1Q5JWR5 2465 aa13.11□□□□□ -0.31
SQSTM1-205ENST00000464493 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 H0Y3Z8 333 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 AIM2O14862 343 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 SHOX2O60902 331 aaPredicted RBP13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 EPPINO95925 133 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 FAM107AO95990 144 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 THBS1P07996 1170 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 GLI4P10075 376 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 PRKCAP17252 672 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 PGCP20142 388 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms