RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 CREBZFQ9NS37 354 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 RCE1Q9Y256 329 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 RASD1Q9Y272 281 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 CSNK1G3Q9Y6M4 447 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 MAOBP27338 520 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 AHRP35869 848 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 RPS21P63220 83 aaKnown RBP7.46□□□□□ -1.22
CIITA-201ENST00000324288 SH3BP2P78314 561 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 RAB33AQ14088 237 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 C9orf135Q5VTT2 229 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 UHRF1Q96T88 793 aaPredicted RBP7.46□□□□□ -1.22
CIITA-201ENST00000324288 KCNK13Q9HB14 408 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 B3GNT3Q9Y2A9 372 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 COL3A1P02461 1466 aaPredicted RBP7.45□□□□□ -1.22
CIITA-201ENST00000324288 CD300LBA8K4G0 201 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 GSTM4Q03013 218 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 DLX2Q07687 328 aaPredicted RBP7.45□□□□□ -1.22
CIITA-201ENST00000324288 PNPLA1Q8N8W4 532 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 ADAMTS19Q8TE59 1207 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 NLE1Q9NVX2 485 aaPredicted RBP7.45□□□□□ -1.22
CIITA-201ENST00000324288 K7ERQ8 282 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 ERCC1P07992 297 aaPredicted RBP7.45□□□□□ -1.22
CIITA-201ENST00000324288 CLDN6P56747 220 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 ADGRG5Q8IZF4 528 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 DTWD1Q8N5C7 304 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 TRAM1L1Q8N609 369 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 SYNPRQ8TBG9 265 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 C7orf43Q8WVR3 580 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 CCDC74AQ96AQ1 378 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 VSTM2BA6NLU5 285 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 ACOT7O00154 380 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 ZNF30P17039 623 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 KDELR2P33947 212 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 SIM1P81133 766 aaPredicted RBP7.45□□□□□ -1.22
CIITA-201ENST00000324288 ZNF805Q5CZA5 627 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 HEPHL1Q6MZM0 1159 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 HUS1BQ8NHY5 278 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 SLC2A12Q8TD20 617 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 OR11A1Q9GZK7 315 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 CDH20Q9HBT6 801 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 ZMAT5Q9UDW3 170 aaKnown RBP7.45□□□□□ -1.22
CIITA-201ENST00000324288 ANKRD34BA5PLL1 514 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 NTF3P20783 257 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.45□□□□□ -1.22
CIITA-201ENST00000324288 NRMQ8IXM6 262 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 GMPR2Q9P2T1 348 aaKnown RBP7.45□□□□□ -1.22
CIITA-201ENST00000324288 ZNF780AO75290 641 aaPredicted RBP7.45□□□□□ -1.22
CIITA-201ENST00000324288 ZNF888P0CJ79 500 aaPredicted RBP7.45□□□□□ -1.22
CIITA-201ENST00000324288 PROZP22891 400 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 CATSPEREQ5SY80 951 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 LARP4Q71RC2 724 aaKnown RBP eCLIP7.45□□□□□ -1.22
CIITA-201ENST00000324288 OR4F15Q8NGB8 312 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 KCNJ9Q92806 393 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 IGSF8Q969P0 613 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 SLC19A3Q9BZV2 496 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 APMAPQ9HDC9 416 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 RAB27BO00194 218 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 EMC8O43402 210 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 LCATP04180 440 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 ARHGAP1Q07960 439 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 DOC2AQ14183 400 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 OR5M10Q6IEU7 315 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 NAGSQ8N159 534 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 OR8J1Q8NGP2 316 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 OR5AK2Q8NH90 309 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 NANPQ8TBE9 248 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 MITD1Q8WV92 249 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 TRMT2BQ96GJ1 504 aaKnown RBP7.45□□□□□ -1.22
CIITA-201ENST00000324288 RANBP9Q96S59 729 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 FAM53CQ9NYF3 392 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 URGCP-MRPS24S4R325 110 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 LIPIQ6XZB0 460 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 PARP16Q8N5Y8 322 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 CCDC71LQ8N9Z2 235 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 OPA3Q9H6K4 179 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 HEBP1Q9NRV9 189 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 OR14J1Q9UGF5 321 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 CACNG3O60359 315 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 PNPP00491 289 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 P04436 131 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 CCR6P51684 374 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 RPS18P62269 152 aaKnown RBP7.45□□□□□ -1.22
CIITA-201ENST00000324288 OR10K2Q6IF99 312 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 CNEP1R1Q8N9A8 125 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 OR5B2Q96R09 309 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 MYO5AQ9Y4I1 1855 aaKnown RBP7.45□□□□□ -1.22
CIITA-201ENST00000324288 IFT172Q9UG01 1749 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 LOC102724200A0A096LPH7 203 aaPredicted RBP7.45□□□□□ -1.22
CIITA-201ENST00000324288 ERVK-16P61578 105 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 LCN8Q6JVE9 175 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 SLC22A25Q6T423 547 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 ZNF765Q7L2R6 523 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 MAP3K3Q99759 626 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 ASH2LQ9UBL3 628 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 ASB3Q9Y575 518 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 NWD2Q9ULI1 1742 aa7.45□□□□□ -1.22
CIITA-201ENST00000324288 PHF3Q92576 2039 aaKnown RBP7.44□□□□□ -1.22
CIITA-201ENST00000324288 XRCC3O43542 346 aa7.44□□□□□ -1.22
CIITA-201ENST00000324288 SYT7O43581 403 aa7.44□□□□□ -1.22
CIITA-201ENST00000324288 HLA-AP01891 365 aaKnown RBP7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms