RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 DUSP18Q8NEJ0 188 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 OR9K2Q8NGE7 335 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 OR1J1Q8NGS3 322 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 TFAP2BQ92481 460 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 TECTBQ96PL2 329 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 TXNDC17Q9BRA2 123 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 MUTYHQ9UIF7 546 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 GMEB2Q9UKD1 530 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 PMF1-BGLAPU3KQ54 211 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF705FA8MVS1 300 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-201ENST00000303395 TFP02787 698 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 SERPINA7P05543 415 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF705DP0CH99 300 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF705BP0CI00 300 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-201ENST00000303395 NFYBP25208 207 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 NDUFA6P56556 154 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 PPP2CBP62714 309 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 CTBSQ01459 385 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 DMWDQ09019 674 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 TSPAN31Q12999 210 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 LILRB2Q8N423 598 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF561Q8N587 486 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 EIF4E3Q8N5X7 224 aaKnown RBP4.95□□□□□ -1.62
SCN1A-201ENST00000303395 MYADMQ96S97 322 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 RRAGCQ9HB90 399 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 APOBEC3GQ9HC16 384 aaKnown RBP4.95□□□□□ -1.62
SCN1A-201ENST00000303395 BCL2L10Q9HD36 194 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 Q9N2J8 555 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 NGBQ9NPG2 151 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 TMEM212A6NML5 194 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 NCBP2LA6PVI3 153 aaKnown RBP4.95□□□□□ -1.62
SCN1A-201ENST00000303395 NPIPA2E9PIF3 369 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 NPIPA3F8WFD2 350 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 JMJD7P0C870 316 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 GM2AP17900 193 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 NMBRP28336 390 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 ISL1P61371 349 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 ECM1Q16610 540 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 PAN3Q58A45 887 aaKnown RBP4.95□□□□□ -1.62
SCN1A-201ENST00000303395 GGNBP1Q5YKI7 109 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 PDE12Q6L8Q7 609 aaKnown RBP4.95□□□□□ -1.62
SCN1A-201ENST00000303395 SERPINA9Q86WD7 417 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 TMEM151BQ8IW70 566 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF485Q8NCK3 441 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 IL17RDQ8NFM7 739 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 WDR20Q8TBZ3 569 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 DGAT2Q96PD7 388 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 ALOXE3Q9BYJ1 711 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 ALX4Q9H161 411 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF385DQ9H6B1 395 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 PLEKHA2Q9HB19 425 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 A4GALTQ9NPC4 353 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 POLLQ9UGP5 575 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 PCDHAC2Q9Y5I4 1007 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 MTCL1Q9Y4B5 1905 aaKnown RBP4.95□□□□□ -1.62
SCN1A-201ENST00000303395 B4DEV8 164 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 K7EQM0 130 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 BHLHE40O14503 412 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 GPR37L1O60883 481 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 DFFBO76075 338 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 GCSHP23434 173 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 PIGAP37287 484 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 FASLGP48023 281 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 HOXA1P49639 335 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-201ENST00000303395 CLEC20AQ6ZU45 233 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 TMED4Q7Z7H5 227 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 DTWD1Q8N5C7 304 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 STEAP2Q8NFT2 490 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 OR56A3Q8NH54 315 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 CCDC74BQ96LY2 380 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 KCNC2Q96PR1 638 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 P2RY13Q9BPV8 354 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 C1QTNF2Q9BXJ5 285 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 METTL7AQ9H8H3 244 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 MTHFD2LQ9H903 347 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-201ENST00000303395 MAN2C1Q9NTJ4 1040 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 EBF1Q9UH73 591 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 MYOFQ9NZM1 2061 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 A0A0U1RQK1 487 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 OR2T7P0C7T2 308 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 ARAFP10398 606 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 CHATP28329 748 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 SHMT2P34897 504 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 SOX18P35713 384 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 HNRNPA0Q13151 305 aaKnown RBP4.95□□□□□ -1.62
SCN1A-201ENST00000303395 TNK1Q13470 666 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 LTB4RQ15722 352 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 KIAA0895LQ68EN5 471 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 GPR142Q7Z601 462 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 GLB1L2Q8IW92 636 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 LSMEM1Q8N8F7 131 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 SUMF1Q8NBK3 374 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 OR9A4Q8NGU2 314 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 TANKQ92844 425 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 GNPNAT1Q96EK6 184 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-201ENST00000303395 GJD4Q96KN9 370 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-201ENST00000303395 TSSK3Q96PN8 268 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 TMEM185BQ9H7F4 350 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 PATZ1Q9HBE1 687 aaKnown RBP4.95□□□□□ -1.62
SCN1A-201ENST00000303395 SERTAD4Q9NUC0 356 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms