RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ARHGAP33O14559 1287 aa10.09□□□□□ -0.79
CD44-201ENST00000263398 UGT2B7P16662 529 aa10.09□□□□□ -0.79
CD44-201ENST00000263398 SELENOVP59797 346 aa10.09□□□□□ -0.79
CD44-201ENST00000263398 ILKQ13418 452 aa10.09□□□□□ -0.79
CD44-201ENST00000263398 ATAD3CQ5T2N8 411 aa10.09□□□□□ -0.79
CD44-201ENST00000263398 OR2G6Q5TZ20 316 aa10.09□□□□□ -0.79
CD44-201ENST00000263398 METAP1DQ6UB28 335 aaPredicted RBP10.09□□□□□ -0.79
CD44-201ENST00000263398 GPR137CQ8N3F9 429 aa10.09□□□□□ -0.79
CD44-201ENST00000263398 ARL14Q8N4G2 192 aa10.09□□□□□ -0.79
CD44-201ENST00000263398 OR4F15Q8NGB8 312 aa10.09□□□□□ -0.79
CD44-201ENST00000263398 GPR78Q96P69 363 aa10.09□□□□□ -0.79
CD44-201ENST00000263398 STRADBQ9C0K7 418 aa10.09□□□□□ -0.79
CD44-201ENST00000263398 MED17Q9NVC6 651 aa10.09□□□□□ -0.79
CD44-201ENST00000263398 ARPC1BO15143 372 aaKnown RBP10.08□□□□□ -0.8
CD44-201ENST00000263398 GPRIN2O60269 458 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 GASTP01350 101 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 MTHFD2P13995 350 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 NPR2P20594 1047 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 DRD1P21728 446 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 ARNTP27540 789 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 EIF2S3P41091 472 aaKnown RBP10.08□□□□□ -0.8
CD44-201ENST00000263398 ERVK-25P63136 954 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 MGAT3Q09327 533 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 ZNF322Q6U7Q0 402 aaPredicted RBP10.08□□□□□ -0.8
CD44-201ENST00000263398 TMPPEQ6ZT21 453 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 PM20D2Q8IYS1 436 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 LINC01465Q8N7H1 131 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 OR5K2Q8NHB8 316 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 BRIX1Q8TDN6 353 aaKnown RBP10.08□□□□□ -0.8
CD44-201ENST00000263398 KIAA1143Q96AT1 154 aaPredicted RBP10.08□□□□□ -0.8
CD44-201ENST00000263398 KCTD12Q96CX2 325 aaKnown RBP10.08□□□□□ -0.8
CD44-201ENST00000263398 BTBD2Q9BX70 525 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 TMEM121BQ9BXQ6 578 aaPredicted RBP10.08□□□□□ -0.8
CD44-201ENST00000263398 TUBB1Q9H4B7 451 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 ENY2Q9NPA8 101 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 HCSTQ9UBK5 93 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 UBE2J1Q9Y385 318 aaPredicted RBP10.08□□□□□ -0.8
CD44-201ENST00000263398 RNF215Q9Y6U7 377 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 ABCA3Q99758 1704 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 TRBV4-1A0A0J9YWV2 114 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 GYPBP06028 91 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 FURINP09958 794 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 TMEM225BP0DP42 221 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 CPMP14384 443 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 CHRNEQ04844 493 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 PTPRRQ15256 657 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 TATDN3Q17R31 274 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 CCNJQ5T5M9 372 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 PRAMEF8Q5VWM4 474 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 PRAMEF7Q5VXH5 474 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 Q6ZSR6 202 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 FGF13Q92913 245 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 ZNF443Q9Y2A4 671 aaPredicted RBP10.08□□□□□ -0.8
CD44-201ENST00000263398 XIRP1Q702N8 1843 aaKnown RBP10.08□□□□□ -0.8
CD44-201ENST00000263398 ZNF736B4DX44 427 aaPredicted RBP10.08□□□□□ -0.8
CD44-201ENST00000263398 F5H5P2 479 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 SGK494L7N484 410 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 GABARAPO95166 117 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 PSMB10P40306 273 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 DLX5P56178 289 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 ZNF616Q08AN1 781 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 IRF4Q15306 451 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 OR1Q1Q15612 314 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 ELP2Q6IA86 826 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 SLC46A3Q7Z3Q1 461 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 KCTD20Q7Z5Y7 419 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 RNF113BQ8IZP6 322 aaKnown RBP10.08□□□□□ -0.8
CD44-201ENST00000263398 CDC6Q99741 560 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 EIF5A2Q9GZV4 153 aaKnown RBP10.08□□□□□ -0.8
CD44-201ENST00000263398 TMEM168Q9H0V1 697 aa10.08□□□□□ -0.8
CD44-201ENST00000263398 TESQ9UGI8 421 aaKnown RBP10.08□□□□□ -0.8
CD44-201ENST00000263398 DDX60LQ5H9U9 1706 aaKnown RBP10.08□□□□□ -0.8
CD44-201ENST00000263398 LOC102723532A0A0G2JNH3 316 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 CA3P07451 260 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 BMP4P12644 408 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 ZNF35P13682 527 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 CLDN2P57739 230 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 SLC26A5P58743 744 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 ACY1Q03154 408 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 MALLQ13021 153 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 TUBB3Q13509 450 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 EFR3AQ14156 821 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 EIF2B1Q14232 305 aaKnown RBP10.07□□□□□ -0.8
CD44-201ENST00000263398 NKPD1Q17RQ9 610 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 C3orf38Q5JPI3 329 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 TMEM244Q5VVB8 128 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 GPR139Q6DWJ6 353 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 CFAP77Q6ZQR2 320 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 COMMD7Q86VX2 200 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 MCATQ8IVS2 390 aaKnown RBP10.07□□□□□ -0.8
CD44-201ENST00000263398 OR52R1Q8NGF1 315 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 CDCA3Q99618 268 aaPredicted RBP10.07□□□□□ -0.8
CD44-201ENST00000263398 GON7Q9BXV9 100 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 TPSD1Q9BZJ3 242 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 SLC25A18Q9H1K4 315 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 CCDC86Q9H6F5 360 aaKnown RBP10.07□□□□□ -0.8
CD44-201ENST00000263398 CXXC1Q9P0U4 656 aaPredicted RBP10.07□□□□□ -0.8
CD44-201ENST00000263398 ICKQ9UPZ9 632 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 NAALAD2Q9Y3Q0 740 aa10.07□□□□□ -0.8
CD44-201ENST00000263398 HEMK1Q9Y5R4 338 aaPredicted RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms