RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 SERPINI2O75830 405 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 PDE9AO76083 593 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 TIMP1P01033 207 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 PPM1AP35813 382 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 MAPK9P45984 424 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 CLDN20P56880 219 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 NIPAL3Q6P499 406 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 GANCQ8TET4 914 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 ASB16Q96NS5 453 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 HDHD2Q9H0R4 259 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 PELI2Q9HAT8 420 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 SIDT1Q9NXL6 827 aaKnown RBP9.91□□□□□ -0.82
USP28-201ENST00000003302 ZNF624Q9P2J8 865 aaPredicted RBP9.91□□□□□ -0.82
USP28-201ENST00000003302 TNFRSF10DQ9UBN6 386 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 ZNF443Q9Y2A4 671 aaPredicted RBP9.91□□□□□ -0.82
USP28-201ENST00000003302 SPAG17Q6Q759 2223 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 G3V3Q6 166 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 GMDSO60547 372 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 SOX30O94993 753 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 HLA-DQB1P01920 261 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 MT-ND4P03905 459 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 YES1P07947 543 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 CELA2BP08218 269 aaPredicted RBP9.91□□□□□ -0.82
USP28-201ENST00000003302 DEFB110Q30KQ9 67 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 ARHGAP15Q53QZ3 475 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 FAM198BQ6UWH4 519 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 C9orf62Q8N4C0 152 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 C19orf18Q8NEA5 215 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 TMIEQ8NEW7 156 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 UBE2E3Q969T4 207 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 TSSK2Q96PF2 358 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 SLC27A6Q9Y2P4 619 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 DENND4AQ7Z401 1863 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 EDDM13A0A1B0GTR0 161 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 CDHR4A6H8M9 788 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 FGF17O60258 216 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 CLEC3AO75596 197 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 OR2B3O76000 313 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 FCARP24071 287 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 PYCR1P32322 319 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 GJA4P35212 333 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 MLLT3P42568 568 aaPredicted RBP9.9□□□□□ -0.82
USP28-201ENST00000003302 KHKP50053 298 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 P2RX3P56373 397 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 RRAS2P62070 204 aaPredicted RBP9.9□□□□□ -0.82
USP28-201ENST00000003302 RPS7P62081 194 aaKnown RBP9.9□□□□□ -0.82
USP28-201ENST00000003302 DUSP8Q13202 625 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.9□□□□□ -0.82
USP28-201ENST00000003302 OR7G1Q8NGA0 311 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 ZFAND1Q8TCF1 268 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 ACOT11Q8WXI4 607 aaPredicted RBP9.9□□□□□ -0.82
USP28-201ENST00000003302 SMG7Q92540 1137 aaKnown RBP9.9□□□□□ -0.82
USP28-201ENST00000003302 LRIG1Q96JA1 1093 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 SDF2Q99470 211 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 PINK1Q9BXM7 581 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 FLRT3Q9NZU0 649 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 KCMF1Q9P0J7 381 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 ZNF223Q9UK11 482 aaPredicted RBP9.9□□□□□ -0.82
USP28-201ENST00000003302 ATG2AQ2TAZ0 1938 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 RNGTTO60942 597 aaKnown RBP9.9□□□□□ -0.82
USP28-201ENST00000003302 HRGP04196 525 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 GIFP27352 417 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 SLC6A1P30531 599 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 NTSP30990 170 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 RPS5P46782 204 aaKnown RBP9.9□□□□□ -0.82
USP28-201ENST00000003302 HTRA4P83105 476 aaPredicted RBP9.9□□□□□ -0.82
USP28-201ENST00000003302 TRAM2Q15035 370 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 TMEM52BQ4KMG9 183 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 PLA1AQ53H76 456 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 RRM2BQ7LG56 351 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 DUSP18Q8NEJ0 188 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 OR2L5Q8NG80 312 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 OR51Q1Q8NH59 317 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 CNOT9Q92600 299 aaKnown RBP9.9□□□□□ -0.82
USP28-201ENST00000003302 BADQ92934 168 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 TOX2Q96NM4 488 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 GFI1Q99684 422 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 THAP7Q9BT49 309 aaPredicted RBP9.9□□□□□ -0.82
USP28-201ENST00000003302 SEMA4CQ9C0C4 833 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 NKIRAS2Q9NYR9 191 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.9□□□□□ -0.82
USP28-201ENST00000003302 WDR45Q9Y484 360 aa9.9□□□□□ -0.82
USP28-201ENST00000003302 A8MUA0 341 aa9.9□□□□□ -0.83
USP28-201ENST00000003302 INMT-MINDY4F8WBC2 141 aa9.9□□□□□ -0.83
USP28-201ENST00000003302 PPP1R3DO95685 299 aa9.9□□□□□ -0.83
USP28-201ENST00000003302 WNT1P04628 370 aa9.9□□□□□ -0.83
USP28-201ENST00000003302 PKLRP30613 574 aa9.9□□□□□ -0.83
USP28-201ENST00000003302 DSG2Q14126 1118 aa9.9□□□□□ -0.83
USP28-201ENST00000003302 ERV3-1Q14264 604 aa9.9□□□□□ -0.83
USP28-201ENST00000003302 KLHL22Q53GT1 634 aa9.9□□□□□ -0.83
USP28-201ENST00000003302 TJAP1Q5JTD0 557 aa9.9□□□□□ -0.83
USP28-201ENST00000003302 RNLSQ5VYX0 342 aa9.9□□□□□ -0.83
USP28-201ENST00000003302 VITQ6UXI7 678 aa9.9□□□□□ -0.83
USP28-201ENST00000003302 SDR9C7Q8NEX9 313 aa9.9□□□□□ -0.83
USP28-201ENST00000003302 HCAR2Q8TDS4 363 aa9.9□□□□□ -0.83
USP28-201ENST00000003302 SUSD6Q92537 303 aa9.9□□□□□ -0.83
USP28-201ENST00000003302 KXD1Q9BQD3 176 aa9.9□□□□□ -0.83
USP28-201ENST00000003302 SLC25A18Q9H1K4 315 aa9.9□□□□□ -0.83
USP28-201ENST00000003302 MAPRE3Q9UPY8 281 aa9.9□□□□□ -0.83
USP28-201ENST00000003302 AK6Q9Y3D8 172 aaKnown RBP9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms