RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 CDH24Q86UP0 819 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 ZNF227Q86WZ6 799 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 ARMC10Q8N2F6 343 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 METTL25Q8N6Q8 603 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 GOLM1Q8NBJ4 401 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 CHDHQ8NE62 594 aaPredicted RBP11.6□□□□□ -0.55
UPF1-208ENST00000600012 SDCCAG3Q96C92 435 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 SLC47A1Q96FL8 570 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 DUS3LQ96G46 650 aaKnown RBP11.6□□□□□ -0.55
UPF1-208ENST00000600012 TPD52L3Q96J77 140 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 HSH2DQ96JZ2 352 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 COL21A1Q96P44 957 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 TRNT1Q96Q11 434 aaKnown RBP11.6□□□□□ -0.55
UPF1-208ENST00000600012 SDF2Q99470 211 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 BTBD2Q9BX70 525 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 QRSL1Q9H0R6 528 aaKnown RBP11.6□□□□□ -0.55
UPF1-208ENST00000600012 NXF5Q9H1B4 397 aaKnown RBP11.6□□□□□ -0.55
UPF1-208ENST00000600012 DCLRE1BQ9H816 532 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 RNPEPL1Q9HAU8 725 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 MCCC2Q9HCC0 563 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 FBXO34Q9NWN3 711 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 RPS6KA6Q9UK32 745 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 SAMD4AQ9UPU9 718 aaKnown RBP11.6□□□□□ -0.55
UPF1-208ENST00000600012 CFL2Q9Y281 166 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 CELSR1Q9NYQ6 3014 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 ZNF407Q9C0G0 2248 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 HCFC1P51610 2035 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 PHF3Q92576 2039 aaKnown RBP11.59□□□□□ -0.55
UPF1-208ENST00000600012 TACC2O95359 2948 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 NPIPA5A0A0B4J1W7 369 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 TRBV11-1A0A0K0K1C0 115 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 TMEM229AB2RXF0 380 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 NPIPA7E9PJI5 369 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 ZNHIT1O43257 154 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 TIPRLO75663 272 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 PDE9AO76083 593 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 BAG2O95816 211 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 IGKV1D-16P01601 117 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 NPIPA8P0DM63 369 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 UMPSP11172 480 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 ANPEPP15144 967 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 PTGS2P35354 604 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 MEOX1P50221 254 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 SESN3P58005 492 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 KRTAP10-9P60411 292 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 TLE4Q04727 773 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 GNA13Q14344 377 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 TESK1Q15569 626 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 PRAMEF8Q5VWM4 474 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 PRAMEF7Q5VXH5 474 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 HLA-DQA1Q5Y7H0 255 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 TYW3Q6IPR3 259 aaKnown RBP11.59□□□□□ -0.55
UPF1-208ENST00000600012 MEX3BQ6ZN04 569 aaKnown RBP11.59□□□□□ -0.55
UPF1-208ENST00000600012 SLC29A4Q7RTT9 530 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 FGD2Q7Z6J4 655 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 SMYD1Q8NB12 490 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 APCDD1LQ8NCL9 501 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 FAM57AQ8TBR7 257 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 ADIPOR1Q96A54 375 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 VMP1Q96GC9 406 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 PYURFQ96I23 114 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 RNF145Q96MT1 663 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 BTBD9Q96Q07 612 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 RSPO3Q9BXY4 272 aaPredicted RBP11.59□□□□□ -0.55
UPF1-208ENST00000600012 UGT2B28Q9BY64 529 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 DEFB126Q9BYW3 111 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 WWTR1Q9GZV5 400 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 ZNF350Q9GZX5 532 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 BCL2L10Q9HD36 194 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 Q9N2J8 555 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 CCM2LQ9NUG4 571 aaPredicted RBP11.59□□□□□ -0.55
UPF1-208ENST00000600012 ADPRHL2Q9NX46 363 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 CALML5Q9NZT1 146 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 MKLN1Q9UL63 735 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 GPR55Q9Y2T6 319 aaPredicted RBP11.59□□□□□ -0.55
UPF1-208ENST00000600012 WDR45Q9Y484 360 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 OR10H1Q9Y4A9 318 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 AP4S1Q9Y587 144 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 PCDHGB3Q9Y5G1 929 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 GPC6Q9Y625 555 aaPredicted RBP11.59□□□□□ -0.55
UPF1-208ENST00000600012 DSPPQ9NZW4 1301 aa11.59□□□□□ -0.55
UPF1-208ENST00000600012 SPG11Q96JI7 2443 aa11.58□□□□□ -0.56
UPF1-208ENST00000600012 A0A0G2JPF8 293 aa11.58□□□□□ -0.56
UPF1-208ENST00000600012 CENPVL1A0A0U1RR11 272 aa11.58□□□□□ -0.56
UPF1-208ENST00000600012 C2orf92A0A1B0GVN3 265 aa11.58□□□□□ -0.56
UPF1-208ENST00000600012 TTC36A6NLP5 189 aa11.58□□□□□ -0.56
UPF1-208ENST00000600012 OR6C76A6NM76 312 aa11.58□□□□□ -0.56
UPF1-208ENST00000600012 HNRNPCL2B2RXH8 293 aa11.58□□□□□ -0.56
UPF1-208ENST00000600012 HNRNPCL3B7ZW38 293 aa11.58□□□□□ -0.56
UPF1-208ENST00000600012 KLRC4-KLRK1H3BQV0 150 aa11.58□□□□□ -0.56
UPF1-208ENST00000600012 FCMRO60667 390 aa11.58□□□□□ -0.56
UPF1-208ENST00000600012 KCNK2O95069 426 aa11.58□□□□□ -0.56
UPF1-208ENST00000600012 MFN2O95140 757 aa11.58□□□□□ -0.56
UPF1-208ENST00000600012 AK1P00568 194 aa11.58□□□□□ -0.56
UPF1-208ENST00000600012 TPOP07202 933 aa11.58□□□□□ -0.56
UPF1-208ENST00000600012 HNRNPCL4P0DMR1 293 aa11.58□□□□□ -0.56
UPF1-208ENST00000600012 TNFRSF1BP20333 461 aa11.58□□□□□ -0.56
UPF1-208ENST00000600012 CD247P20963 164 aa11.58□□□□□ -0.56
UPF1-208ENST00000600012 PPICP45877 212 aa11.58□□□□□ -0.56
UPF1-208ENST00000600012 NR0B1P51843 470 aaKnown RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms