RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 BTBD16Q32M84 506 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 COLEC12Q5KU26 742 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 ATP1A1-AS1Q5TC04 95 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 AGAP7PQ5VUJ5 663 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 KRT73Q86Y46 540 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 GALNT12Q8IXK2 581 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 PARP8Q8N3A8 854 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 AQP11Q8NBQ7 271 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 ZNF540Q8NDQ6 660 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 OR5L2Q8NGL0 311 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 BBS10Q8TAM1 723 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 RAB2BQ8WUD1 216 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 TM9SF4Q92544 642 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 TTC9Q92623 222 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 UBE2FQ969M7 185 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 SENP5Q96HI0 755 aaPredicted RBP9.41□□□□□ -0.9
VPS53-202ENST00000389040 AGAP4Q96P64 663 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 ARHGAP9Q9BRR9 750 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 ZNF160Q9HCG1 818 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 BCL2L10Q9HD36 194 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 CCNB1IP1Q9NPC3 277 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 ENOPH1Q9UHY7 261 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 PCDHGA10Q9Y5H3 936 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 A0A087WV62 115 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 A0A1W2PPW3 197 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 ZNF99A8MXY4 864 aaPredicted RBP9.41□□□□□ -0.9
VPS53-202ENST00000389040 TGFBR3LH3BV60 316 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 EMC8O43402 210 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 RGS10O43665 173 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 PLOD3O60568 738 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 ZFAND5O76080 213 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 INMTO95050 263 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 IGKV3-11P04433 115 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 CCNA2P20248 432 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 FUT4P22083 530 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 CSNK2BP67870 215 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 FUT7Q11130 342 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 ZNF770Q6IQ21 691 aaPredicted RBP9.41□□□□□ -0.9
VPS53-202ENST00000389040 TCTN3Q6NUS6 607 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 DHRS4L2Q6PKH6 230 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 IGFL3Q6UXB1 125 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 OR4N5Q8IXE1 308 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 SHISA5Q8N114 240 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 APCDD1LQ8NCL9 501 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 C17orf47Q8NEP4 570 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 OR9A2Q8NGT5 310 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 VANGL1Q8TAA9 524 aaPredicted RBP9.41□□□□□ -0.9
VPS53-202ENST00000389040 FAM81AQ8TBF8 368 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 MIPOL1Q8TD10 442 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 FAR1Q8WVX9 515 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 IPCEF1Q8WWN9 437 aaPredicted RBP9.41□□□□□ -0.9
VPS53-202ENST00000389040 GTPBP3Q969Y2 492 aaKnown RBP9.41□□□□□ -0.9
VPS53-202ENST00000389040 CTHRC1Q96CG8 243 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 OTUB1Q96FW1 271 aaPredicted RBP9.41□□□□□ -0.9
VPS53-202ENST00000389040 SMAD5Q99717 465 aaKnown RBP9.41□□□□□ -0.9
VPS53-202ENST00000389040 YIPF4Q9BSR8 244 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 SPATA5L1Q9BVQ7 753 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 NMNAT1Q9HAN9 279 aaPredicted RBP9.41□□□□□ -0.9
VPS53-202ENST00000389040 C3orf14Q9HBI5 128 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 GPR83Q9NYM4 423 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 WARS2Q9UGM6 360 aaKnown RBP9.41□□□□□ -0.9
VPS53-202ENST00000389040 TMCC3Q9ULS5 477 aa9.41□□□□□ -0.9
VPS53-202ENST00000389040 HEMK1Q9Y5R4 338 aaPredicted RBP9.41□□□□□ -0.9
VPS53-202ENST00000389040 TRBV4-1A0A0J9YWV2 114 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 ZZEF1O43149 2961 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 SEMA7AO75326 666 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 DDAH2O95865 285 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 GASTP01350 101 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 CHRM4P08173 479 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 POU2F1P14859 743 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 ITGA3P26006 1051 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 MC3RP41968 323 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 GP2P55259 537 aaKnown RBP9.4□□□□□ -0.9
VPS53-202ENST00000389040 FUT5Q11128 374 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 PRICKLE4Q2TBC4 344 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 FGD3Q5JSP0 725 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 HSDL2Q6YN16 418 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 DEF8Q6ZN54 512 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 RBM45Q8IUH3 476 aaKnown RBP9.4□□□□□ -0.9
VPS53-202ENST00000389040 P3H2Q8IVL5 708 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 DEPDC4Q8N2C3 294 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 VWA5B2Q8N398 1253 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 SVOPQ8N4V2 548 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 OR4D11Q8NGI4 311 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 NUBPLQ8TB37 319 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 SLC2A12Q8TD20 617 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 RORBQ92753 470 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 ELP4Q96EB1 424 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 C16orf58Q96GQ5 468 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 THOC3Q96J01 351 aaKnown RBP9.4□□□□□ -0.9
VPS53-202ENST00000389040 DHRS1Q96LJ7 313 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 UBL7Q96S82 380 aaPredicted RBP9.4□□□□□ -0.9
VPS53-202ENST00000389040 SH3GL3Q99963 347 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 RHNO1Q9BSD3 238 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 BTBD2Q9BX70 525 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 RNF32Q9H0A6 362 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 PTGFRNQ9P2B2 879 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 ACAD8Q9UKU7 415 aa9.4□□□□□ -0.9
VPS53-202ENST00000389040 FER1L5A0AVI2 2057 aa9.4□□□□□ -0.91
VPS53-202ENST00000389040 LAMA5O15230 3695 aa9.4□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms