RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 GRHL3Q8TE85 626 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 RNF138Q8WVD3 245 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 SLC35B4Q969S0 331 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 FRMD6Q96NE9 622 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 THTPAQ9BU02 230 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 PINK1Q9BXM7 581 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 MFRPQ9BY79 579 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 TRIM8Q9BZR9 551 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 TRIM15Q9C019 465 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 LAT2Q9GZY6 243 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 ZFP64Q9NPA5 681 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 FBXO34Q9NWN3 711 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 ADPRHL2Q9NX46 363 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 QPCTLQ9NXS2 382 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 MAGEL2Q9UJ55 1249 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 ANAPC2Q9UJX6 822 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 RPS6KA6Q9UK32 745 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 BAG5Q9UL15 447 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 WIF1Q9Y5W5 379 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 GPC6Q9Y625 555 aaPredicted RBP8.45□□□□□ -1.06
LDLR-210ENST00000559340 SMG1Q96Q15 3661 aaKnown RBP8.45□□□□□ -1.06
LDLR-210ENST00000559340 TLN1Q9Y490 2541 aaKnown RBP8.45□□□□□ -1.06
LDLR-210ENST00000559340 CELSR3Q9NYQ7 3312 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 NPIPA5A0A0B4J1W7 369 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 NPIPA7E9PJI5 369 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 J3QKU1 62 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 CXCR6O00574 342 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 SNPHO15079 494 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 GSC2O15499 205 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 ZNF264O43296 627 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 UGT2B17O75795 530 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 ZIC2O95409 532 aaPredicted RBP8.44□□□□□ -1.06
LDLR-210ENST00000559340 CSTAP01040 98 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 PDGFAP04085 211 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 C8BP07358 591 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 PABPC4LP0CB38 370 aaKnown RBP8.44□□□□□ -1.06
LDLR-210ENST00000559340 NPIPA8P0DM63 369 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 UBL4AP11441 157 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 NID1P14543 1247 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 RPS4Y1P22090 263 aaKnown RBP8.44□□□□□ -1.06
LDLR-210ENST00000559340 PRKAR1BP31321 381 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 KDELR2P33947 212 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 SLC6A8P48029 635 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 ST13P50502 369 aaKnown RBP8.44□□□□□ -1.06
LDLR-210ENST00000559340 SUMO3P55854 103 aaPredicted RBP8.44□□□□□ -1.06
LDLR-210ENST00000559340 TRAP1Q12931 704 aaKnown RBP8.44□□□□□ -1.06
LDLR-210ENST00000559340 GANABQ14697 944 aaKnown RBP8.44□□□□□ -1.06
LDLR-210ENST00000559340 PLEKHN1Q494U1 663 aaPredicted RBP8.44□□□□□ -1.06
LDLR-210ENST00000559340 MTX3Q5HYI7 312 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 PDZK1Q5T2W1 519 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 PRAMEF20Q5VT98 475 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 SLC6A19Q695T7 634 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 TIGD3Q6B0B8 471 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 GLYATQ6IB77 296 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 DHRS4L2Q6PKH6 230 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 FAM180AQ6UWF9 173 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 ZNF550Q7Z398 422 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.44□□□□□ -1.06
LDLR-210ENST00000559340 YTHDF3Q7Z739 585 aaKnown RBP8.44□□□□□ -1.06
LDLR-210ENST00000559340 ZAR1Q86SH2 424 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 GALNT10Q86SR1 603 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 MARCH3Q86UD3 253 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 PTRH1Q86Y79 214 aaKnown RBP8.44□□□□□ -1.06
LDLR-210ENST00000559340 EID3Q8N140 333 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 ZFP62Q8NB50 900 aaPredicted RBP8.44□□□□□ -1.06
LDLR-210ENST00000559340 B4GALNT2Q8NHY0 566 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 FBXO27Q8NI29 283 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 DUSP19Q8WTR2 217 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 FIG4Q92562 907 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 FAM162AQ96A26 154 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 SLC7A6OSQ96CW6 309 aaPredicted RBP8.44□□□□□ -1.06
LDLR-210ENST00000559340 LRGUKQ96M69 825 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 JSRP1Q96MG2 331 aaPredicted RBP8.44□□□□□ -1.06
LDLR-210ENST00000559340 RUBCNLQ9H714 662 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 AGPAT4Q9NRZ5 378 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 CD300AQ9UGN4 299 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 MRPS18CQ9Y3D5 142 aaKnown RBP8.44□□□□□ -1.06
LDLR-210ENST00000559340 SNX13Q9Y5W8 968 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 DSPPQ9NZW4 1301 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 NCKAP5O14513 1909 aa8.44□□□□□ -1.06
LDLR-210ENST00000559340 HELZ2Q9BYK8 2649 aaKnown RBP8.44□□□□□ -1.06
LDLR-210ENST00000559340 NBEAQ8NFP9 2946 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 A0A087WZY1 265 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 IGLV3-32A0A0A0MS00 114 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 K7EM74 188 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 SYT5O00445 386 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 GNB5O14775 395 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 SUV39H1O43463 412 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 HCRTR2O43614 444 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 TRIM3O75382 744 aaPredicted RBP8.43□□□□□ -1.06
LDLR-210ENST00000559340 MFN2O95140 757 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 HOXB6P17509 224 aaKnown RBP8.43□□□□□ -1.06
LDLR-210ENST00000559340 GGT1P19440 569 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 TCN1P20061 433 aaPredicted RBP8.43□□□□□ -1.06
LDLR-210ENST00000559340 PGCP20142 388 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 AQP1P29972 269 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 IFNA8P32881 189 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 PTGDSP41222 190 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 CD97P48960 835 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 DNASE1L1P49184 302 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms