RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 FLNAP21333 2647 aaKnown RBP13.23□□□□□ -0.29
VPS28-215ENST00000531924 ACANP16112 2415 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 FAM171A2A8MVW0 826 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 H3BNH8 94 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 TNFSF11O14788 317 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 LSM1O15116 133 aaKnown RBP13.22□□□□□ -0.29
VPS28-215ENST00000531924 CXCL13O43927 109 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 NUDT14O95848 222 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 CGAP01215 116 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 BCKDHAP12694 445 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 PPP3CBP16298 524 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 RAC1P63000 192 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 IFFO1Q0D2I5 559 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 PDE7AQ13946 482 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 TMEM44Q2T9K0 475 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 HBMQ6B0K9 141 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 CLEC9AQ6UXN8 241 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 C20orf204Q6ZNR8 217 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 RNF165Q6ZSG1 346 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 ESPNLQ6ZVH7 1005 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 ZNF527Q8NB42 609 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 OR2V1Q8NHB1 315 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 B4GALNT2Q8NHY0 566 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 AGR3Q8TD06 166 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.22□□□□□ -0.29
VPS28-215ENST00000531924 HOXB13Q92826 284 aaPredicted RBP13.22□□□□□ -0.29
VPS28-215ENST00000531924 OTUB1Q96FW1 271 aaPredicted RBP13.22□□□□□ -0.29
VPS28-215ENST00000531924 APOPT1Q96IL0 206 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 FCRL1Q96LA6 429 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 PRPF18Q99633 342 aaKnown RBP13.22□□□□□ -0.29
VPS28-215ENST00000531924 TUBB1Q9H4B7 451 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 TIGARQ9NQ88 270 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 ATAD3AQ9NVI7 634 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 NTMQ9P121 344 aa13.22□□□□□ -0.29
VPS28-215ENST00000531924 FAF1Q9UNN5 650 aaPredicted RBP13.22□□□□□ -0.29
VPS28-215ENST00000531924 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 C7orf72A4D263 438 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 PIP5K1BO14986 540 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 NPHS1O60500 1241 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 SS18L1O75177 396 aaPredicted RBP13.21□□□□□ -0.29
VPS28-215ENST00000531924 PEX11AO75192 247 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 FGF4P08620 206 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 KRT16P08779 473 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 PABPC4LP0CB38 370 aaKnown RBP13.21□□□□□ -0.29
VPS28-215ENST00000531924 HOXB4P17483 251 aaPredicted RBP13.21□□□□□ -0.29
VPS28-215ENST00000531924 ALDH3A1P30838 453 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 CCKARP32238 428 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 MAP3K8P41279 467 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 EIF1P41567 113 aaKnown RBP13.21□□□□□ -0.29
VPS28-215ENST00000531924 SLC6A8P48029 635 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 CARD18P57730 90 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 LTBQ06643 244 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 LASP1Q14847 261 aaKnown RBP13.21□□□□□ -0.29
VPS28-215ENST00000531924 PLPPR5Q32ZL2 321 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 ATP6AP1LQ52LC2 224 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 ARL13AQ5H913 290 aaPredicted RBP13.21□□□□□ -0.29
VPS28-215ENST00000531924 CCNJQ5T5M9 372 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 BEND4Q6ZU67 534 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 Q71RC1 249 aaPredicted RBP13.21□□□□□ -0.29
VPS28-215ENST00000531924 CXorf67Q86X51 503 aaPredicted RBP13.21□□□□□ -0.29
VPS28-215ENST00000531924 LILRA2Q8N149 483 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 LRRC75A-AS1Q8N1F1 130 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 FAM110BQ8TC76 370 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 PHOSPHO1Q8TCT1 267 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 GIMAP5Q96F15 307 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 HOXD1Q9GZZ0 328 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 PLSCR4Q9NRQ2 329 aa13.21□□□□□ -0.29
VPS28-215ENST00000531924 MED12LQ86YW9 2145 aa13.21□□□□□ -0.3
VPS28-215ENST00000531924 GJE1A6NN92 205 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 TMEM233B4DJY2 109 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 GTPBP1O00178 669 aaKnown RBP13.2□□□□□ -0.3
VPS28-215ENST00000531924 SCAMP2O15127 329 aaKnown RBP13.2□□□□□ -0.3
VPS28-215ENST00000531924 ADAMDEC1O15204 470 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 CFLARO15519 480 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 SIAH2O43255 324 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 HMGN2P05204 90 aaKnown RBP13.2□□□□□ -0.3
VPS28-215ENST00000531924 TUBBP07437 444 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 CHRNGP07510 517 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 SFTPDP35247 375 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 FRKP42685 505 aaPredicted RBP13.2□□□□□ -0.3
VPS28-215ENST00000531924 TP53BP2Q13625 1128 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 MLC1Q15049 377 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 GUSBP1Q15486 140 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 LSM12Q3MHD2 195 aaKnown RBP13.2□□□□□ -0.3
VPS28-215ENST00000531924 BEX5Q5H9J7 111 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 ALKBH2Q6NS38 261 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 PLEKHM3Q6ZWE6 761 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 ZAR1Q86SH2 424 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 RIBC1Q8N443 379 aaPredicted RBP13.2□□□□□ -0.3
VPS28-215ENST00000531924 NATD1Q8N6N6 113 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 LRRN4CLQ8ND94 238 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 OR7A2PQ8NGA2 310 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 OR56A1Q8NGH5 318 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 ADAMTS15Q8TE58 950 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 OR5P2Q8WZ92 322 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 OSTF1Q92882 214 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 CDS1Q92903 461 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 FAM120BQ96EK7 910 aaKnown RBP13.2□□□□□ -0.3
VPS28-215ENST00000531924 PERPQ96FX8 193 aa13.2□□□□□ -0.3
VPS28-215ENST00000531924 KLHL15Q96M94 604 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms