RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 AGTR1P30556 359 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 ZNF41P51814 821 aaPredicted RBP11.07□□□□□ -0.64
CPSF3-204ENST00000489403 PPP2R2BQ00005 443 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 ZNF844Q08AG5 666 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 PDE7AQ13946 482 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 CAPRIN1Q14444 709 aaKnown RBP11.07□□□□□ -0.64
CPSF3-204ENST00000489403 CD226Q15762 336 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 DUSP5Q16690 384 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 CCDC153Q494R4 210 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 CCNJQ5T5M9 372 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 CPTPQ5TA50 214 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 HBMQ6B0K9 141 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 MFSD12Q6NUT3 480 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 Q6ZSR9 355 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 WFDC8Q8IUA0 241 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 ZNF611Q8N823 705 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 OR2T11Q8NH01 316 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 CEP70Q8NHQ1 597 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 CLHC1Q8NHS4 586 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 ZFP28Q8NHY6 868 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 ACTRT2Q8TDY3 377 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 PPCDCQ96CD2 204 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 ZBED6CLQ96FA7 236 aaPredicted RBP11.07□□□□□ -0.64
CPSF3-204ENST00000489403 MS4A4EQ96PG1 132 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 TSSK3Q96PN8 268 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 CCT7Q99832 543 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 OR10A4Q9H209 315 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 C12orf65Q9H3J6 166 aaKnown RBP11.07□□□□□ -0.64
CPSF3-204ENST00000489403 CXorf56Q9H5V9 222 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 REEP4Q9H6H4 257 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 C12orf49Q9H741 205 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 HHATLQ9HCP6 504 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 C1orf109Q9NX04 203 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 GPR52Q9Y2T5 361 aa11.07□□□□□ -0.64
CPSF3-204ENST00000489403 A0A1W2PQD3 144 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 SLC28A1O00337 649 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 SCDO00767 359 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 RGS14O43566 566 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 TMCC2O75069 709 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 ME2P23368 584 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 SHC1P29353 583 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 LCN1P31025 176 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 PRIM2P49643 509 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 MANFP55145 182 aaKnown RBP11.06□□□□□ -0.64
CPSF3-204ENST00000489403 FOXF1Q12946 379 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 ZNF239Q16600 458 aaKnown RBP11.06□□□□□ -0.64
CPSF3-204ENST00000489403 EXOSC6Q5RKV6 272 aaKnown RBP11.06□□□□□ -0.64
CPSF3-204ENST00000489403 STK32CQ86UX6 486 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 TRABD2AQ86V40 505 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 MISPQ8IVT2 679 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 IFT20Q8IY31 132 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 CEP112Q8N8E3 955 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 OR6Y1Q8NGX8 325 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 RAB3IL1Q8TBN0 382 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 RNF128Q8TEB7 428 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 ROBO4Q8WZ75 1007 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 AKAP1Q92667 903 aaKnown RBP eCLIP11.06□□□□□ -0.64
CPSF3-204ENST00000489403 OSTF1Q92882 214 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 C16orf58Q96GQ5 468 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 KLHL15Q96M94 604 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 IQCGQ9H095 443 aaKnown RBP11.06□□□□□ -0.64
CPSF3-204ENST00000489403 TUBB1Q9H4B7 451 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 FANCFQ9NPI8 374 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 UBQLN4Q9NRR5 601 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 ACSS1Q9NUB1 689 aaPredicted RBP11.06□□□□□ -0.64
CPSF3-204ENST00000489403 OXSMQ9NWU1 459 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 SH3BP4Q9P0V3 963 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 ADAM21Q9UKJ8 722 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 PRR14LQ5THK1 2151 aa11.06□□□□□ -0.64
CPSF3-204ENST00000489403 ANK3Q12955 4377 aaKnown RBP11.05□□□□□ -0.64
CPSF3-204ENST00000489403 LSM1O15116 133 aaKnown RBP11.05□□□□□ -0.64
CPSF3-204ENST00000489403 GCM2O75603 506 aaPredicted RBP11.05□□□□□ -0.64
CPSF3-204ENST00000489403 SOX30O94993 753 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 ALOX5P09917 674 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 LINGO3P0C6S8 592 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 NEFHP12036 1026 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 HPGDP15428 266 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 EFNA1P20827 205 aaPredicted RBP11.05□□□□□ -0.64
CPSF3-204ENST00000489403 SFTPDP35247 375 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 ATP5J2P56134 94 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 RPS4XP62701 263 aaKnown RBP11.05□□□□□ -0.64
CPSF3-204ENST00000489403 RPL38P63173 70 aaKnown RBP11.05□□□□□ -0.64
CPSF3-204ENST00000489403 TSC22D1Q15714 1073 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 RFTN2Q52LD8 501 aaPredicted RBP11.05□□□□□ -0.64
CPSF3-204ENST00000489403 PDSS1Q5T2R2 415 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 LIPMQ5VYY2 423 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 ZCCHC12Q6PEW1 402 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 TFAP2EQ6VUC0 442 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 RNF165Q6ZSG1 346 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 CNPY4Q8N129 248 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 LILRA2Q8N149 483 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 COX18Q8N8Q8 333 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 CCDC63Q8NA47 563 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 B4GALNT2Q8NHY0 566 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 ABHD3Q8WU67 409 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 JADE3Q92613 823 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 S100PBPQ96BU1 408 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 SRXN1Q9BYN0 137 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 SIRT3Q9NTG7 399 aaPredicted RBP11.05□□□□□ -0.64
CPSF3-204ENST00000489403 BAIAP2L1Q9UHR4 511 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms