RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 SDHAF3Q9NRP4 125 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 SACM1LQ9NTJ5 587 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 RLIMQ9NVW2 624 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 CNIH4Q9P003 139 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 SLC35A3Q9Y2D2 325 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 SLC9A8Q9Y2E8 581 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 OR5H15A6NDH6 313 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 MKRN2OSH3BPM6 223 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 LGI1O95970 557 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 C8BP07358 591 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 UBTFL6P0CB48 400 aaPredicted RBP16.55■□□□□ 0.24
SDC1-203ENST00000403076 CCL3P10147 92 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 UBL4AP11441 157 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 TNFRSF1BP20333 461 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 OR1E2P47887 323 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 CD226Q15762 336 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 MDGA2Q7Z553 956 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 GEMIN6Q8WXD5 167 aaKnown RBP16.55■□□□□ 0.24
SDC1-203ENST00000403076 CNOT9Q92600 299 aaKnown RBP16.55■□□□□ 0.24
SDC1-203ENST00000403076 EXTL1Q92935 676 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 RSPO3Q9BXY4 272 aaPredicted RBP16.55■□□□□ 0.24
SDC1-203ENST00000403076 RNF32Q9H0A6 362 aa16.55■□□□□ 0.24
SDC1-203ENST00000403076 CNTRLQ7Z7A1 2325 aa16.54■□□□□ 0.24
SDC1-203ENST00000403076 CDHR4A6H8M9 788 aa16.54■□□□□ 0.24
SDC1-203ENST00000403076 C2orf72A6NCS6 295 aa16.54■□□□□ 0.24
SDC1-203ENST00000403076 TMEM229AB2RXF0 380 aa16.54■□□□□ 0.24
SDC1-203ENST00000403076 RGS8P57771 180 aaPredicted RBP16.54■□□□□ 0.24
SDC1-203ENST00000403076 SLC30A6Q6NXT4 461 aa16.54■□□□□ 0.24
SDC1-203ENST00000403076 CARM1Q86X55 608 aa16.54■□□□□ 0.24
SDC1-203ENST00000403076 ADGRG5Q8IZF4 528 aa16.54■□□□□ 0.24
SDC1-203ENST00000403076 TMCO5AQ8N6Q1 288 aa16.54■□□□□ 0.24
SDC1-203ENST00000403076 PSD4Q8NDX1 1056 aa16.54■□□□□ 0.24
SDC1-203ENST00000403076 DUSP19Q8WTR2 217 aa16.54■□□□□ 0.24
SDC1-203ENST00000403076 HAS2Q92819 552 aa16.54■□□□□ 0.24
SDC1-203ENST00000403076 SIGLEC12Q96PQ1 595 aa16.54■□□□□ 0.24
SDC1-203ENST00000403076 GALNT9Q9HCQ5 603 aa16.54■□□□□ 0.24
SDC1-203ENST00000403076 CNOT11Q9UKZ1 510 aaKnown RBP16.54■□□□□ 0.24
SDC1-203ENST00000403076 CARD8Q9Y2G2 431 aa16.54■□□□□ 0.24
SDC1-203ENST00000403076 CHST2Q9Y4C5 530 aa16.54■□□□□ 0.24
SDC1-203ENST00000403076 CHD8Q9HCK8 2581 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 G3V3Y1 287 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 M0R3H8 397 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 ZNF264O43296 627 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 FRS3O43559 492 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 HCRTR2O43614 444 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 SLC25A12O75746 678 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 ADH7P40394 386 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 CCR4P51679 360 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 C17orf67Q0P5P2 114 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 SNTA1Q13424 505 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 NDUFAF6Q330K2 333 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 TBCELQ5QJ74 424 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 MISPQ8IVT2 679 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 SNRNP27Q8WVK2 155 aaKnown RBP16.53■□□□□ 0.24
SDC1-203ENST00000403076 PYDC1Q8WXC3 89 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 TM9SF4Q92544 642 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 SH3YL1Q96HL8 342 aaPredicted RBP16.53■□□□□ 0.24
SDC1-203ENST00000403076 C5orf34Q96MH7 638 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 SMAD5Q99717 465 aaKnown RBP16.53■□□□□ 0.24
SDC1-203ENST00000403076 ANGPTL4Q9BY76 406 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 MAGIXQ9H6Y5 334 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 SH2D2AQ9NP31 389 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 PPP4R1LQ9P1A2 415 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 PCDHGA9Q9Y5G4 932 aaKnown RBP16.53■□□□□ 0.24
SDC1-203ENST00000403076 FREM2Q5SZK8 3169 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 EXPH5Q8NEV8 1989 aa16.53■□□□□ 0.24
SDC1-203ENST00000403076 NEURL1O76050 574 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 EPPINO95925 133 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 IFNW1P05000 195 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 GKN3PP0CG01 181 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 RAP2AP10114 183 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 CD46P15529 392 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 SLC7A1P30825 629 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 MASP1P48740 699 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 KCNC4Q03721 635 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 NRF1Q16656 503 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 FNDC7Q5VTL7 733 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 TMEM81Q6P7N7 255 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 DEF8Q6ZN54 512 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 PACS2Q86VP3 889 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 COMTD1Q86VU5 262 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 ZNF227Q86WZ6 799 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 ZNF440Q8IYI8 595 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 ARHGDIGQ99819 225 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 RTN4RQ9BZR6 473 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 YY1AP1Q9H869 796 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 HHATLQ9HCP6 504 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 KLHL1Q9NR64 748 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 CCM2LQ9NUG4 571 aaPredicted RBP16.52■□□□□ 0.24
SDC1-203ENST00000403076 DNAJB12Q9NXW2 375 aaKnown RBP16.52■□□□□ 0.24
SDC1-203ENST00000403076 AP4S1Q9Y587 144 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 WIF1Q9Y5W5 379 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 PTPRQQ9UMZ3 2332 aa16.52■□□□□ 0.24
SDC1-203ENST00000403076 CPAMD8Q8IZJ3 1885 aa16.52■□□□□ 0.23
SDC1-203ENST00000403076 hCG_2039718K7EN88 272 aa16.51■□□□□ 0.23
SDC1-203ENST00000403076 GMFGO60234 142 aa16.51■□□□□ 0.23
SDC1-203ENST00000403076 EIF4E2O60573 245 aaKnown RBP16.51■□□□□ 0.23
SDC1-203ENST00000403076 BCAS1O75363 584 aaPredicted RBP16.51■□□□□ 0.23
SDC1-203ENST00000403076 ITGB2P05107 769 aa16.51■□□□□ 0.23
SDC1-203ENST00000403076 FABP3P05413 133 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms