RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 TBC1D3CQ6IPX1 549 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 TBC1D3Q8IZP1 549 aaPredicted RBP13.39□□□□□ -0.27
RTF1-201ENST00000389629 KIAA1958Q8N8K9 716 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 CD300LFQ8TDQ1 290 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 SYT17Q9BSW7 474 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 URB1O60287 2271 aaKnown RBP13.39□□□□□ -0.27
RTF1-201ENST00000389629 TRAV18A0A075B6X5 111 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 GRXCR1A8MXD5 290 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 SNAPC5O75971 98 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 PGAM2P15259 253 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 CD6P30203 668 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 CSNK1DP48730 415 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 ELOAQ14241 798 aaKnown RBP13.39□□□□□ -0.27
RTF1-201ENST00000389629 TEAD2Q15562 447 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 KRBOX4Q5JUW0 171 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 SFXN4Q6P4A7 337 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 LSMEM1Q8N8F7 131 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 SLC7A13Q8TCU3 470 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 ADAMTS14Q8WXS8 1223 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 NR4A3Q92570 626 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 WBP2Q969T9 261 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 HRH3Q9Y5N1 445 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 TTC3P53804 2025 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 AGPAT2O15120 278 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 SCO2O43819 266 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 PSMB1P20618 241 aaKnown RBP13.39□□□□□ -0.27
RTF1-201ENST00000389629 CSRP3P50461 194 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 PRMT2P55345 433 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 SORDQ00796 357 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 ZNF169Q14929 603 aaPredicted RBP13.39□□□□□ -0.27
RTF1-201ENST00000389629 ZNF385BQ569K4 471 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 YIF1BQ5BJH7 314 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 TEX261Q6UWH6 196 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 RSPO2Q6UXX9 243 aaPredicted RBP13.39□□□□□ -0.27
RTF1-201ENST00000389629 DEFB118Q96PH6 123 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 U3KQ87 197 aa13.39□□□□□ -0.27
RTF1-201ENST00000389629 RNF13O43567 381 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 CYB5AP00167 134 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 HMGN2P05204 90 aaKnown RBP13.38□□□□□ -0.27
RTF1-201ENST00000389629 CYBAP13498 195 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 CTNNB1P35222 781 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 DLX5P56178 289 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 PER3P56645 1201 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 ACTC1P68032 377 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 ACTA1P68133 377 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 FABP5Q01469 135 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 SLCO4C1Q6ZQN7 724 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 GPR155Q7Z3F1 870 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 OR4N5Q8IXE1 308 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 RASGEF1AQ8N9B8 481 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 RNASE11Q8TAA1 199 aaKnown RBP13.38□□□□□ -0.27
RTF1-201ENST00000389629 THAP4Q8WY91 577 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 MACROD1Q9BQ69 325 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 SLC7A7Q9UM01 511 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 A0A1W2PQ45 241 aaPredicted RBP13.38□□□□□ -0.27
RTF1-201ENST00000389629 A0A1W2PQY0 241 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 ZAR1LA6NP61 321 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 IGLV3-27P01718 113 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 CLDN20P56880 219 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 GSG1LQ6UXU4 331 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 ZNF248Q8NDW4 579 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 CD99L2Q8TCZ2 262 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 CHTF18Q8WVB6 975 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 BACE2Q9Y5Z0 518 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 TRDV1A0A1B0GX56 115 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 TMEM202A6NGA9 273 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 ZNF860A6NHJ4 632 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 EMC8O43402 210 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 LALBAP00709 142 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 SSX1Q16384 188 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 AANATQ16613 207 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 OR4C11Q6IEV9 310 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 ACSM5Q6NUN0 579 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 APH1BQ8WW43 257 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 RBM18Q96H35 190 aaKnown RBP13.38□□□□□ -0.27
RTF1-201ENST00000389629 PRRC1Q96M27 445 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 SLC6A7Q99884 636 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 LINC00597Q9H2U6 94 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 FANCFQ9NPI8 374 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 SOCS6O14544 535 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 CA12O43570 354 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 B3GALT2O43825 422 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 PRICKLE3O43900 615 aaPredicted RBP13.38□□□□□ -0.27
RTF1-201ENST00000389629 PPP1R3DO95685 299 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 ZNF250P15622 560 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 AGTR1P30556 359 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 SOX18P35713 384 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 RAP2BP61225 183 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 SNRPGP62308 76 aaKnown RBP13.38□□□□□ -0.27
RTF1-201ENST00000389629 KIAA0040Q15053 153 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 PPP1R14AQ96A00 147 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 SRA1Q9HD15 236 aaKnown RBP13.38□□□□□ -0.27
RTF1-201ENST00000389629 SLC52A3Q9NQ40 469 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 FBXO10Q9UK96 956 aa13.38□□□□□ -0.27
RTF1-201ENST00000389629 SLC31A1O15431 190 aa13.37□□□□□ -0.27
RTF1-201ENST00000389629 C1orf105O95561 183 aa13.37□□□□□ -0.27
RTF1-201ENST00000389629 ETHE1O95571 254 aa13.37□□□□□ -0.27
RTF1-201ENST00000389629 MMP11P24347 488 aa13.37□□□□□ -0.27
RTF1-201ENST00000389629 EVX1P49640 407 aa13.37□□□□□ -0.27
RTF1-201ENST00000389629 PGDP52209 483 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms