RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 RGS9O75916 674 aaPredicted RBP1.28□□□□□ -2.2
LINC00643-201ENST00000334389 SMC2O95347 1197 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 C1orf105O95561 183 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 IL33O95760 270 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 MBD3O95983 291 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 CYP1A2P05177 515 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 PTMAP06454 111 aaKnown RBP1.28□□□□□ -2.2
LINC00643-201ENST00000334389 CELA2AP08217 269 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 RPSAP08865 295 aaKnown RBP1.28□□□□□ -2.2
LINC00643-201ENST00000334389 GSTA2P09210 222 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 GOLGA6DP0CG33 693 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 PGA5P0DJD9 388 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 SAGP10523 405 aaPredicted RBP1.28□□□□□ -2.2
LINC00643-201ENST00000334389 PRKAR1AP10644 381 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 IDO1P14902 403 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 GPD1P21695 349 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 ATP5A1P25705 553 aaKnown RBP1.28□□□□□ -2.2
LINC00643-201ENST00000334389 GDF1P27539 372 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 SLC1A1P43005 524 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 MMP13P45452 471 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 ARL4DP49703 201 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 GEMP55040 296 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 TIRAPP58753 221 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 RNF4P78317 190 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 CDR2Q01850 454 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 RIPPLY1Q0D2K3 151 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 SELENBP1Q13228 472 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 BECN1Q14457 450 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 KCNMB1Q16558 191 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 MAPKAPK3Q16644 382 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 MRGPRG-AS1Q2M3A8 158 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 KRTAP6-3Q3LI67 103 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 WDR72Q3MJ13 1102 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 OXLD1Q5BKU9 147 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 ANKRD20A8PQ5CZ79 823 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 SPIN3Q5JUX0 258 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 ERMARDQ5T6L9 678 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 ATP1A1-AS1Q5TC04 95 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 ANKRD16Q6P6B7 361 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 UNQ9370/PRO34162Q6UXP9 181 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 RANBP10Q6VN20 620 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 RNF111Q6ZNA4 994 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF429Q86V71 674 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 TAX1BP1Q86VP1 789 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF440Q8IYI8 595 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 IZUMO1Q8IYV9 350 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 FAM184AQ8NB25 1140 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF740Q8NDX6 193 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 LINC01006Q8NI28 216 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 ASB15Q8WXK1 588 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 ZBTB9Q96C00 473 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF524Q96C55 264 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 MTERF3Q96E29 417 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 ELMOD3Q96FG2 381 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 BICD1Q96G01 975 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 TMX3Q96JJ7 454 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 FAR2Q96K12 515 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 UBXN10Q96LJ8 280 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 TGM7Q96PF1 710 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 PAIP1Q9H074 479 aaKnown RBP1.28□□□□□ -2.2
LINC00643-201ENST00000334389 ISCUQ9H1K1 167 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 DDX31Q9H8H2 851 aaKnown RBP1.28□□□□□ -2.2
LINC00643-201ENST00000334389 FAM204AQ9H8W3 233 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 SIX2Q9NPC8 291 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 GOLGA6AQ9NYA3 693 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 TAS2R13Q9NYV9 303 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 UBAP1Q9NZ09 502 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 XPR1Q9UBH6 696 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 AAR2Q9Y312 384 aaKnown RBP1.28□□□□□ -2.2
LINC00643-201ENST00000334389 DMXL1Q9Y485 3027 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 GON4LQ3T8J9 2241 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 FLG2Q5D862 2391 aaPredicted RBP1.28□□□□□ -2.2
LINC00643-201ENST00000334389 FAM234BA2RU67 622 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 ACOD1A6NK06 481 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 F8W735 103 aaPredicted RBP1.28□□□□□ -2.2
LINC00643-201ENST00000334389 KCNK1O00180 336 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 SLC31A1O15431 190 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 ERI3O43414 337 aaKnown RBP1.28□□□□□ -2.2
LINC00643-201ENST00000334389 PSTPIP1O43586 416 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 PLOD3O60568 738 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 SDC3O75056 442 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 ANXA9O76027 345 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 PLAUP00749 431 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 IGHG1P01857 330 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 YES1P07947 543 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 PRSS56P0CW18 603 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 CPA3P15088 417 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 MPGP29372 298 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 FMO5P49326 533 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF165P49910 485 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 MXI1P50539 228 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 ARPP19P56211 112 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 KRTAP10-4P60372 401 aaPredicted RBP1.28□□□□□ -2.2
LINC00643-201ENST00000334389 RAC3P60763 192 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 ETF1P62495 437 aaKnown RBP1.28□□□□□ -2.2
LINC00643-201ENST00000334389 TFAMQ00059 246 aaKnown RBP1.28□□□□□ -2.2
LINC00643-201ENST00000334389 EBPQ15125 230 aaKnown RBP1.28□□□□□ -2.2
LINC00643-201ENST00000334389 PPA1Q15181 289 aa1.28□□□□□ -2.2
LINC00643-201ENST00000334389 TRIP13Q15645 432 aaPredicted RBP1.28□□□□□ -2.2
LINC00643-201ENST00000334389 GRAMD1BQ3KR37 738 aa1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms