RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 TMEFF2Q9UIK5 374 aaPredicted RBP13.14□□□□□ -0.31
USP39-220ENST00000613444 DCHS1Q96JQ0 3298 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 TRBV11-1A0A0K0K1C0 115 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 SLC30A4O14863 429 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 HPRP00739 348 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 ABCD3P28288 659 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 HOXC5Q00444 222 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 KLHL26Q53HC5 615 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 DESI1Q6ICB0 168 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 PPP1R32Q7Z5V6 425 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 GRAMD2AQ8IUY3 354 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 PIK3C3Q8NEB9 887 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 OR52J3Q8NH60 311 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 ADAMTS14Q8WXS8 1223 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 PRRC1Q96M27 445 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 ZNF570Q96NI8 536 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 KLHL28Q9NXS3 571 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 PDP1Q9P0J1 537 aaPredicted RBP13.14□□□□□ -0.31
USP39-220ENST00000613444 PCNX3Q9H6A9 2034 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 DLL1O00548 723 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 PRG2P13727 222 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 UQCRBP14927 111 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 RGS8P57771 180 aaPredicted RBP13.13□□□□□ -0.31
USP39-220ENST00000613444 GABREP78334 506 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 EXOC3L2Q2M3D2 409 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 COLEC12Q5KU26 742 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 FNDC7Q5VTL7 733 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 CYP4Z1Q86W10 505 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 SLC34A3Q8N130 599 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 CNOT9Q92600 299 aaKnown RBP13.13□□□□□ -0.31
USP39-220ENST00000613444 OMA1Q96E52 524 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 NAF1Q96HR8 494 aaKnown RBP13.13□□□□□ -0.31
USP39-220ENST00000613444 ADOQ96SZ5 270 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 RBM4BQ9BQ04 359 aaKnown RBP13.13□□□□□ -0.31
USP39-220ENST00000613444 RBM4Q9BWF3 364 aaKnown RBP13.13□□□□□ -0.31
USP39-220ENST00000613444 CACYBPQ9HB71 228 aaKnown RBP13.13□□□□□ -0.31
USP39-220ENST00000613444 DLL3Q9NYJ7 618 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 SLC13A4Q9UKG4 626 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 NTNG1Q9Y2I2 539 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 DOCK10Q96BY6 2186 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 TRBV4-1A0A0J9YWV2 114 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 CDRT15L2A8MXV6 281 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 RAD1O60671 282 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 ABCB7O75027 752 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 ADAM11O75078 769 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 GADD45GO95257 159 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 UTS2O95399 124 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 NADKO95544 446 aaPredicted RBP13.13□□□□□ -0.31
USP39-220ENST00000613444 IGHEP01854 428 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 DAPP51397 102 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 PSMD4P55036 377 aaKnown RBP13.13□□□□□ -0.31
USP39-220ENST00000613444 DNASE1L3Q13609 305 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 GK3PQ14409 553 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 C6orf52Q5T4I8 152 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 KDM4DQ6B0I6 523 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 FAHD1Q6P587 224 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 APOOLQ6UXV4 268 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 TMPRSS7Q7RTY8 843 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 OIT3Q8WWZ8 545 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 SDCCAG3Q96C92 435 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 UBQLN4Q9NRR5 601 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 DNAJB12Q9NXW2 375 aaKnown RBP13.13□□□□□ -0.31
USP39-220ENST00000613444 SMPD3Q9NY59 655 aaPredicted RBP13.13□□□□□ -0.31
USP39-220ENST00000613444 RAB26Q9ULW5 256 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 AP4B1Q9Y6B7 739 aa13.13□□□□□ -0.31
USP39-220ENST00000613444 LOC101059948A0A1B0GTJ6 334 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 A0A1W2PRQ8 180 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 C21orf140B9A014 251 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.12□□□□□ -0.31
USP39-220ENST00000613444 STMND1H3BQB6 276 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 SNAP29O95721 258 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 OXSR1O95747 527 aaPredicted RBP13.12□□□□□ -0.31
USP39-220ENST00000613444 THY1P04216 161 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 H1F0P07305 194 aaKnown RBP13.12□□□□□ -0.31
USP39-220ENST00000613444 CELA2AP08217 269 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 GKN3PP0CG01 181 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 CYP4B1P13584 511 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 ELAVL4P26378 380 aaKnown RBP13.12□□□□□ -0.31
USP39-220ENST00000613444 HTR2AP28223 471 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 LCN1P31025 176 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 HSPA13P48723 471 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 ARHGDIAP52565 204 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 PSPHP78330 225 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 PLCXD2Q0VAA5 305 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 DGCR6Q14129 220 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 SSPNQ14714 243 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 MICAQ29983 383 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 PLAG1Q6DJT9 500 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 ZNF770Q6IQ21 691 aaPredicted RBP13.12□□□□□ -0.31
USP39-220ENST00000613444 OFCC1Q8IZS5 231 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 THAP3Q8WTV1 239 aaPredicted RBP13.12□□□□□ -0.31
USP39-220ENST00000613444 TFAP2CQ92754 450 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 PSD2Q9BQI7 771 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 OSBPL11Q9BXB4 747 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 GPR87Q9BY21 358 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 ASCL3Q9NQ33 180 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.12□□□□□ -0.31
USP39-220ENST00000613444 MRTO4Q9UKD2 239 aaKnown RBP13.12□□□□□ -0.31
USP39-220ENST00000613444 ASPMQ8IZT6 3477 aa13.12□□□□□ -0.31
USP39-220ENST00000613444 CELSR3Q9NYQ7 3312 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms