RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 EXOC3L2Q2M3D2 409 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 C4orf17Q53FE4 359 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 PWWP2BQ6NUJ5 590 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 ZNF613Q6PF04 617 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 TBPL2Q6SJ96 375 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 DEF8Q6ZN54 512 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 GALNT10Q86SR1 603 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 MISPQ8IVT2 679 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 NAXDQ8IW45 347 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 GNPDA2Q8TDQ7 276 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 ACOT11Q8WXI4 607 aaPredicted RBP7.38□□□□□ -1.23
VPS39-213ENST00000570062 HDAC2Q92769 488 aaKnown RBP7.38□□□□□ -1.23
VPS39-213ENST00000570062 Q96MT0 163 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 TAAR9Q96RI9 348 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 LPAR4Q99677 370 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 MCHR1Q99705 422 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 UCK2Q9BZX2 261 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 VN1R1Q9GZP7 353 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 SMURF2Q9HAU4 748 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 CCNB1IP1Q9NPC3 277 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 EXOSC3Q9NQT5 275 aaKnown RBP7.38□□□□□ -1.23
VPS39-213ENST00000570062 FSCN3Q9NQT6 498 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 RXFP3Q9NSD7 469 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 SLC39A1Q9NY26 324 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 MKLN1Q9UL63 735 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 A4GNTQ9UNA3 340 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 TMEM5Q9Y2B1 443 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 TPRKBQ9Y3C4 175 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 TMEM184BQ9Y519 407 aaPredicted RBP7.38□□□□□ -1.23
VPS39-213ENST00000570062 CLDN16Q9Y5I7 305 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 GMPPBQ9Y5P6 360 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 THADAQ6YHU6 1953 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 ABCA7Q8IZY2 2146 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 ARHGEF17Q96PE2 2063 aaPredicted RBP7.37□□□□□ -1.23
VPS39-213ENST00000570062 HEATR5BQ9P2D3 2071 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 SMIM31A0A1B0GVY4 71 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 A0A1W2PQD3 144 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 A0A1W2PS29 197 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 SH3PXD2BA1X283 911 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 TRAPPC13A5PLN9 417 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 BCKDKO14874 412 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 OR10H3O60404 316 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 DIRAS1O95057 198 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 RECKO95980 971 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 RAB40ALP0C0E4 278 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 CT45A8P0DMV1 189 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 CT45A9P0DMV2 189 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 ICAM2P13598 275 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 OSMP13725 252 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 CD59P13987 128 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 CBLP22681 906 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 MSX1P28360 303 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 SSTR4P31391 388 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 SOX18P35713 384 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 RBM34P42696 430 aaKnown RBP7.37□□□□□ -1.23
VPS39-213ENST00000570062 RPL5P46777 297 aaKnown RBP7.37□□□□□ -1.23
VPS39-213ENST00000570062 TMED10P49755 219 aaKnown RBP7.37□□□□□ -1.23
VPS39-213ENST00000570062 GTF2A1P52655 376 aaPredicted RBP7.37□□□□□ -1.23
VPS39-213ENST00000570062 IST1P53990 364 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 PNLIPRP2P54317 469 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 NR1H2P55055 460 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 GABARAPL2P60520 117 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 CDC42P60953 191 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 RPP38P78345 283 aaKnown RBP7.37□□□□□ -1.23
VPS39-213ENST00000570062 KCNAB2Q13303 367 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 ERV3-1Q14264 604 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 EXT1Q16394 746 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 LPAL2Q16609 132 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 TMEM44Q2T9K0 475 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 CT45A2Q5DJT8 189 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 VWA2Q5GFL6 755 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 FGD3Q5JSP0 725 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 C1orf189Q5VU69 101 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 ZNF691Q5VV52 312 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 RPL13AP3Q6NVV1 102 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 C1orf94Q6P1W5 598 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 TMEM205Q6UW68 189 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 HSDL2Q6YN16 418 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 PLEKHM3Q6ZWE6 761 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 TMPRSS9Q7Z410 1059 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 GLRX5Q86SX6 157 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 DND1Q8IYX4 353 aaKnown RBP7.37□□□□□ -1.23
VPS39-213ENST00000570062 SLC5A8Q8N695 610 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 SLC15A4Q8N697 577 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 METTL27Q8N6F8 245 aaPredicted RBP7.37□□□□□ -1.23
VPS39-213ENST00000570062 LSMEM1Q8N8F7 131 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 BMPERQ8N8U9 685 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 RCBTB1Q8NDN9 531 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 OR6T1Q8NGN1 323 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 OR10Q1Q8NGQ4 319 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 VANGL1Q8TAA9 524 aaPredicted RBP7.37□□□□□ -1.23
VPS39-213ENST00000570062 NUBPLQ8TB37 319 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 SLC2A12Q8TD20 617 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 DNAJA4Q8WW22 397 aaPredicted RBP7.37□□□□□ -1.23
VPS39-213ENST00000570062 IPCEF1Q8WWN9 437 aaPredicted RBP7.37□□□□□ -1.23
VPS39-213ENST00000570062 VMP1Q96GC9 406 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 LIN37Q96GY3 246 aaPredicted RBP7.37□□□□□ -1.23
VPS39-213ENST00000570062 HRASLS5Q96KN8 279 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 MUS81Q96NY9 551 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 DEPDC7Q96QD5 511 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms