RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 C18orf63Q68DL7 685 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 BMPERQ8N8U9 685 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 TFGQ92734 400 aaPredicted RBP10.6□□□□□ -0.71
LDLR-208ENST00000558518 NEURL3Q96EH8 262 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 SFXN2Q96NB2 322 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 LOC285556D6RIA3 1793 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 OR6C74A6NCV1 312 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 DPM1O60762 260 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 SLC19A2O60779 497 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 ANKRD34CP0C6C1 535 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 PSMA3P25788 255 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 TCTE1Q5JU00 501 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 LY6G5CQ5SRR4 150 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 C6orf132Q5T0Z8 1188 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 ZNF322Q6U7Q0 402 aaPredicted RBP10.6□□□□□ -0.71
LDLR-208ENST00000558518 NPAS4Q8IUM7 802 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 ANKRD53Q8N9V6 530 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 KCT2Q8NC54 265 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 ST8SIA4Q92187 359 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 AIF1LQ9BQI0 150 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 ARL6Q9H0F7 186 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 GTF2A1LQ9UNN4 478 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 ENTPD4Q9Y227 616 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 SESN1Q9Y6P5 492 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 DSPPQ9NZW4 1301 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 A0A1B0GVT2 93 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 GRM6O15303 877 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 LGI1O95970 557 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 TYRP14679 529 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 ANXA7P20073 488 aaKnown RBP10.6□□□□□ -0.71
LDLR-208ENST00000558518 MAPK9P45984 424 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 SOX2P48431 317 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 STX4Q12846 297 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 LRRC37A5PQ49AS3 106 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 ACSM3Q53FZ2 586 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 AKIRIN2Q53H80 203 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 FGD2Q7Z6J4 655 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 TMEM150AQ86TG1 271 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 OR52L1Q8NGH7 329 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 OR52B4Q8NGK2 314 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 HSD17B8Q92506 261 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 ZMYND19Q96E35 227 aaPredicted RBP10.6□□□□□ -0.71
LDLR-208ENST00000558518 ENKD1Q9H0I2 346 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 FZD3Q9NPG1 666 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 MAN2C1Q9NTJ4 1040 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 KCND3Q9UK17 655 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 INSL5Q9Y5Q6 135 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 SPEGQ15772 3267 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 TMEM129A0AVI4 362 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 WASH3PC4AMC7 463 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 SLC9A3R1O14745 358 aaPredicted RBP10.59□□□□□ -0.71
LDLR-208ENST00000558518 GMFGO60234 142 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 IRS1P35568 1242 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 WASP42768 502 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 PPM1FP49593 454 aaPredicted RBP10.59□□□□□ -0.71
LDLR-208ENST00000558518 PSMA6P60900 246 aaKnown RBP10.59□□□□□ -0.71
LDLR-208ENST00000558518 KCNC3Q14003 757 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 GXYLT1Q4G148 440 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 ENTPD8Q5MY95 495 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 OTPQ5XKR4 325 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 ZC3H14Q6PJT7 736 aaKnown RBP10.59□□□□□ -0.71
LDLR-208ENST00000558518 KIAA1324Q6UXG2 1013 aaKnown RBP10.59□□□□□ -0.71
LDLR-208ENST00000558518 Q6ZTK2 550 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 OR5M3Q8NGP4 307 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 OR9A2Q8NGT5 310 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 ADAMTS15Q8TE58 950 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 RBP7Q96R05 134 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 MICU1Q9BPX6 476 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 PDCD1LG2Q9BQ51 273 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 MCOLN1Q9GZU1 580 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 KLHL31Q9H511 634 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 RRAGCQ9HB90 399 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 PI15O43692 258 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 GMDSO60547 372 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 ACSM4P0C7M7 580 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 TIMP2P16035 220 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 CLCNKAP51800 687 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 TEKQ02763 1124 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 TRAM2Q15035 370 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 AGERQ15109 404 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 TUSC1Q2TAM9 212 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 NHLRC1Q6VVB1 395 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 FAM83HQ6ZRV2 1179 aaPredicted RBP10.59□□□□□ -0.71
LDLR-208ENST00000558518 RNF165Q6ZSG1 346 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 GET4Q7L5D6 327 aaPredicted RBP10.59□□□□□ -0.71
LDLR-208ENST00000558518 LRRC28Q86X40 367 aaPredicted RBP10.59□□□□□ -0.71
LDLR-208ENST00000558518 NUDT13Q86X67 352 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 RELL2Q8NC24 303 aaPredicted RBP10.59□□□□□ -0.71
LDLR-208ENST00000558518 OR2T33Q8NG76 320 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 OR2T4Q8NH00 348 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 GNPDA2Q8TDQ7 276 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 FCRL1Q96LA6 429 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 DERL3Q96Q80 235 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 FERD3LQ96RJ6 166 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 TMEM175Q9BSA9 504 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 C6orf106Q9H6K1 298 aaPredicted RBP10.59□□□□□ -0.71
LDLR-208ENST00000558518 NEUROD4Q9HD90 331 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 ADAP2Q9NPF8 381 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 TRIM36Q9NQ86 728 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 BABAM2Q9NXR7 383 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms