RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 FRG2CA6NGY1 282 aa12.97□□□□□ -0.33
CLK3-204ENST00000483723 EFCAB7A8K855 629 aa12.97□□□□□ -0.33
CLK3-204ENST00000483723 SLC1A7O00341 560 aa12.97□□□□□ -0.33
CLK3-204ENST00000483723 CDX4O14627 284 aaPredicted RBP12.97□□□□□ -0.33
CLK3-204ENST00000483723 BCAS1O75363 584 aaPredicted RBP12.97□□□□□ -0.33
CLK3-204ENST00000483723 IL33O95760 270 aa12.97□□□□□ -0.33
CLK3-204ENST00000483723 PRG2P13727 222 aa12.97□□□□□ -0.33
CLK3-204ENST00000483723 MMP11P24347 488 aa12.97□□□□□ -0.33
CLK3-204ENST00000483723 CHMP24386 653 aa12.97□□□□□ -0.33
CLK3-204ENST00000483723 UGT2B15P54855 530 aa12.97□□□□□ -0.33
CLK3-204ENST00000483723 OCA2Q04671 838 aa12.97□□□□□ -0.33
CLK3-204ENST00000483723 PTGES3Q15185 160 aaKnown RBP12.97□□□□□ -0.33
CLK3-204ENST00000483723 NADK2Q4G0N4 442 aa12.97□□□□□ -0.33
CLK3-204ENST00000483723 PDZK1Q5T2W1 519 aa12.97□□□□□ -0.33
CLK3-204ENST00000483723 PRR23CQ6ZRP0 262 aa12.97□□□□□ -0.33
CLK3-204ENST00000483723 PLEKHM3Q6ZWE6 761 aa12.97□□□□□ -0.33
CLK3-204ENST00000483723 RANBP3LQ86VV4 465 aaPredicted RBP12.97□□□□□ -0.33
CLK3-204ENST00000483723 CMIPQ8IY22 773 aa12.97□□□□□ -0.33
CLK3-204ENST00000483723 ENTHD1Q8IYW4 607 aa12.97□□□□□ -0.33
CLK3-204ENST00000483723 OR1N1Q8NGS0 311 aa12.97□□□□□ -0.33
CLK3-204ENST00000483723 RHOXF1Q8NHV9 184 aa12.97□□□□□ -0.33
CLK3-204ENST00000483723 ACOT11Q8WXI4 607 aaPredicted RBP12.97□□□□□ -0.33
CLK3-204ENST00000483723 CNOT9Q92600 299 aaKnown RBP12.97□□□□□ -0.33
CLK3-204ENST00000483723 ATOH1Q92858 354 aaPredicted RBP12.97□□□□□ -0.33
CLK3-204ENST00000483723 UBE2FQ969M7 185 aa12.97□□□□□ -0.33
CLK3-204ENST00000483723 SLC41A3Q96GZ6 507 aa12.97□□□□□ -0.33
CLK3-204ENST00000483723 LCORQ96JN0 433 aaPredicted RBP12.97□□□□□ -0.33
CLK3-204ENST00000483723 LAMA1P25391 3075 aa12.97□□□□□ -0.33
CLK3-204ENST00000483723 ASCC3Q8N3C0 2202 aaKnown RBP12.97□□□□□ -0.33
CLK3-204ENST00000483723 OR6C76A6NM76 312 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 POLR1CO15160 346 aaPredicted RBP12.96□□□□□ -0.33
CLK3-204ENST00000483723 TO15178 435 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 WBP4O75554 376 aaKnown RBP12.96□□□□□ -0.33
CLK3-204ENST00000483723 ANGPTL1O95841 491 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 CYC1P08574 325 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 ZNF806P0C7X5 589 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 ATXN8OSP0DMR3 200 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 CD59P13987 128 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 GABRB1P18505 474 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 HTR2AP28223 471 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 LCN1P31025 176 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 CCKBRP32239 447 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 ADH7P40394 386 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 ACAA2P42765 397 aaKnown RBP12.96□□□□□ -0.33
CLK3-204ENST00000483723 GSSP48637 474 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 CSNK2BP67870 215 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 LSM11P83369 360 aaKnown RBP eCLIP12.96□□□□□ -0.33
CLK3-204ENST00000483723 FOXD4Q12950 439 aaPredicted RBP12.96□□□□□ -0.33
CLK3-204ENST00000483723 TARDBPQ13148 414 aaKnown RBP eCLIP12.96□□□□□ -0.333e-6■■■□□ 14.6
CLK3-204ENST00000483723 BORAQ6PGQ7 559 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 ZNF773Q6PK81 442 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 PRICKLE2Q7Z3G6 844 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 SATL1Q86VE3 508 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 NKAIN4Q8IVV8 208 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 PRSS58Q8IYP2 241 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 CNIH3Q8TBE1 160 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 GNPDA2Q8TDQ7 276 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 LRFN5Q96NI6 719 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 GPA33Q99795 319 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 PRSS27Q9BQR3 290 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 HOXD1Q9GZZ0 328 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 NXF5Q9H1B4 397 aaKnown RBP12.96□□□□□ -0.33
CLK3-204ENST00000483723 ADNPQ9H2P0 1102 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 DUSP21Q9H596 190 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 RXFP3Q9NSD7 469 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 TESQ9UGI8 421 aaKnown RBP12.96□□□□□ -0.33
CLK3-204ENST00000483723 BLOC1S6Q9UL45 172 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 PPIEQ9UNP9 301 aaKnown RBP12.96□□□□□ -0.33
CLK3-204ENST00000483723 RNF6Q9Y252 685 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 OR10H1Q9Y4A9 318 aa12.96□□□□□ -0.33
CLK3-204ENST00000483723 TRAPPC13A5PLN9 417 aa12.96□□□□□ -0.34
CLK3-204ENST00000483723 MEN1O00255 615 aa12.96□□□□□ -0.34
CLK3-204ENST00000483723 GKN3PP0CG01 181 aa12.96□□□□□ -0.34
CLK3-204ENST00000483723 JUNBP17275 347 aaPredicted RBP12.96□□□□□ -0.34
CLK3-204ENST00000483723 GSTM3P21266 225 aa12.96□□□□□ -0.34
CLK3-204ENST00000483723 IFNGR2P38484 337 aa12.96□□□□□ -0.34
CLK3-204ENST00000483723 OMPP47874 163 aa12.96□□□□□ -0.34
CLK3-204ENST00000483723 EBPQ15125 230 aaKnown RBP12.96□□□□□ -0.34
CLK3-204ENST00000483723 OR1Q1Q15612 314 aa12.96□□□□□ -0.34
CLK3-204ENST00000483723 KLHL26Q53HC5 615 aa12.96□□□□□ -0.34
CLK3-204ENST00000483723 MRPL14Q6P1L8 145 aaKnown RBP12.96□□□□□ -0.34
CLK3-204ENST00000483723 ANKRD37Q7Z713 158 aa12.96□□□□□ -0.34
CLK3-204ENST00000483723 DEPDC4Q8N2C3 294 aa12.96□□□□□ -0.34
CLK3-204ENST00000483723 ZNF441Q8N8Z8 693 aa12.96□□□□□ -0.34
CLK3-204ENST00000483723 NFAM1Q8NET5 270 aaPredicted RBP12.96□□□□□ -0.34
CLK3-204ENST00000483723 OR4C3Q8NH37 302 aa12.96□□□□□ -0.34
CLK3-204ENST00000483723 APH1BQ8WW43 257 aa12.96□□□□□ -0.34
CLK3-204ENST00000483723 ZNF559Q9BR84 538 aa12.96□□□□□ -0.34
CLK3-204ENST00000483723 PLCXD1Q9NUJ7 323 aa12.96□□□□□ -0.34
CLK3-204ENST00000483723 DNAJB12Q9NXW2 375 aaKnown RBP12.96□□□□□ -0.34
CLK3-204ENST00000483723 ZNF226Q9NYT6 803 aa12.96□□□□□ -0.34
CLK3-204ENST00000483723 RALGAPA1Q6GYQ0 2036 aa12.96□□□□□ -0.34
CLK3-204ENST00000483723 USP34Q70CQ2 3546 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 C2orf92A0A1B0GVN3 265 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 IDSB3KWA1 339 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 B4E171 279 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 KLF4O43474 513 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 ABCB7O75027 752 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 CPNE3O75131 537 aaKnown RBP12.95□□□□□ -0.34
CLK3-204ENST00000483723 CNOT3O75175 753 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms