RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 SUCLG1P53597 346 aaKnown RBP14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 SORDQ00796 357 aa14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 FOXD4Q12950 439 aaPredicted RBP14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 LASP1Q14847 261 aaKnown RBP14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 CCNJQ5T5M9 372 aa14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 IL23RQ5VWK5 629 aa14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 MREGQ8N565 214 aa14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 KRTCAP2Q8N6L1 136 aa14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 CNEP1R1Q8N9A8 125 aa14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 NUDT8Q8WV74 236 aa14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 FIG4Q92562 907 aa14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 ZBTB9Q96C00 473 aa14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 PIGQQ9BRB3 760 aa14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 TMEM109Q9BVC6 243 aa14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 PINK1Q9BXM7 581 aa14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 FBXO34Q9NWN3 711 aa14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 GALNT8Q9NY28 637 aa14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 NIPBLQ6KC79 2804 aaeCLIP14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 IGLV3-32A0A0A0MS00 114 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 A0A1W2PNV4 684 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 ALG1L2C9J202 215 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 CTIFO43310 598 aaKnown RBP14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 NDUFB5O43674 189 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 ITM2AO43736 263 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 TNFSF13O75888 250 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 SMNDC1O75940 238 aaKnown RBP eCLIP14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 CPOXP36551 454 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 SERPINB4P48594 390 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 DIO3P55073 304 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 CLDN15P56746 228 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 CLDN20P56880 219 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 EEFSECP57772 596 aaKnown RBP14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 PPP2R2AP63151 447 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 SIRPAP78324 504 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 ZNF844Q08AG5 666 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 MLC1Q15049 377 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 PDCD2Q16342 344 aaPredicted RBP14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 CPTPQ5TA50 214 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 ZCCHC12Q6PEW1 402 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 OR6Y1Q8NGX8 325 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 OR4C3Q8NH37 302 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 GOT1L1Q8NHS2 421 aaPredicted RBP14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 CDS1Q92903 461 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 SH3YL1Q96HL8 342 aaPredicted RBP14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 PPP1R36Q96LQ0 422 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 PARD6BQ9BYG5 372 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 CENPHQ9H3R5 247 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 PIGMQ9H3S5 423 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 GSX1Q9H4S2 264 aaPredicted RBP14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 PACSIN3Q9UKS6 424 aa14.17□□□□□ -0.14
CCDC88B-205ENST00000472524 ZNF469Q96JG9 3925 aaPredicted RBP14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 LINC01387J3KSC0 135 aa14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 SCDO00767 359 aa14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 C6orf47O95873 294 aa14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 HMGN2P05204 90 aaKnown RBP14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 EPXP11678 715 aa14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 HPGDP15428 266 aa14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 TBXA2RP21731 343 aa14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 DNASE1P24855 282 aa14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 POU6F2P78424 691 aaPredicted RBP14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 TP53BP2Q13625 1128 aa14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 CHI3L2Q15782 390 aa14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 SPDYE7PQ495Y7 208 aa14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 GLYR1Q49A26 553 aaPredicted RBP14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 OR2A2Q6IF42 318 aa14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 PPP4R4Q6NUP7 873 aa14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 VWA1Q6PCB0 445 aa14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 FAM110BQ8TC76 370 aa14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 OR5P2Q8WZ92 322 aa14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 ZNF845Q96IR2 970 aaPredicted RBP14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 BTBD2Q9BX70 525 aa14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 CXorf36Q9H7Y0 433 aa14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 ZNF395Q9H8N7 513 aaPredicted RBP14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 DLL4Q9NR61 685 aa14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 ATAD3AQ9NVI7 634 aa14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 EIF3LQ9Y262 564 aaKnown RBP14.16□□□□□ -0.14
CCDC88B-205ENST00000472524 A8MXE2 369 aa14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 CFLARO15519 480 aa14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 SERPINE1P05121 402 aa14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 NGFRP08138 427 aa14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 G6PDP11413 515 aa14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 SOAT1P35610 550 aa14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 CCT3P49368 545 aaKnown RBP14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 RNF144AP50876 292 aaPredicted RBP14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 RPS3AP61247 264 aaKnown RBP14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 EEF1A1P68104 462 aaKnown RBP14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 DAZAP2Q15038 168 aaPredicted RBP14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 PON3Q15166 354 aa14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 LSM12Q3MHD2 195 aaKnown RBP14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 EXOSC6Q5RKV6 272 aaKnown RBP14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 EEF1A1P5Q5VTE0 462 aa14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 CDC73Q6P1J9 531 aa14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 ZNF781Q8N8C0 355 aa14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 FNDC9Q8TBE3 224 aa14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 STACQ99469 402 aa14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 PRPF18Q99633 342 aaKnown RBP14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 UBQLN4Q9NRR5 601 aa14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 GIN1Q9NXP7 522 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms