RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 MMP11P24347 488 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 ALDH3A2P51648 485 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 CCR4P51679 360 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 LIMK1P53667 647 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 ATP12AP54707 1039 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 PSMD4P55036 377 aaKnown RBP3.42□□□□□ -1.86
RTN4-208ENST00000404909 DCAF7P61962 342 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 EEF1A1P68104 462 aaKnown RBP3.42□□□□□ -1.86
RTN4-208ENST00000404909 DNASE1L3Q13609 305 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 TGIF1Q15583 401 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 EIPR1Q53HC9 387 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 COLEC12Q5KU26 742 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 FCRLBQ6BAA4 426 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 SHQ1Q6PI26 577 aaKnown RBP3.42□□□□□ -1.86
RTN4-208ENST00000404909 DHRS4L2Q6PKH6 230 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 ISLR2Q6UXK2 745 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 PLEKHM3Q6ZWE6 761 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 TSPYL5Q86VY4 417 aaPredicted RBP3.42□□□□□ -1.86
RTN4-208ENST00000404909 ZSCAN1Q8NBB4 408 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 NFAM1Q8NET5 270 aaPredicted RBP3.42□□□□□ -1.86
RTN4-208ENST00000404909 OR11G2Q8NGC1 345 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 PHOSPHO1Q8TCT1 267 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 CNOT9Q92600 299 aaKnown RBP3.42□□□□□ -1.86
RTN4-208ENST00000404909 DIO2Q92813 273 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 OMA1Q96E52 524 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 NAF1Q96HR8 494 aaKnown RBP3.42□□□□□ -1.86
RTN4-208ENST00000404909 CNBD2Q96M20 576 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 MCHR1Q99705 422 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 RBM4BQ9BQ04 359 aaKnown RBP3.42□□□□□ -1.86
RTN4-208ENST00000404909 RBM4Q9BWF3 364 aaKnown RBP3.42□□□□□ -1.86
RTN4-208ENST00000404909 POLR1BQ9H9Y6 1135 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 POLE3Q9NRF9 147 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 ACER3Q9NUN7 267 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 AP4B1Q9Y6B7 739 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 FRYQ5TBA9 3013 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 COL27A1Q8IZC6 1860 aaPredicted RBP3.42□□□□□ -1.86
RTN4-208ENST00000404909 IGHV1-45A0A0A0MS14 117 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 TRBV4-1A0A0J9YWV2 114 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 CDHR4A6H8M9 788 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 OR6C76A6NM76 312 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 GTPBP1O00178 669 aaKnown RBP3.42□□□□□ -1.86
RTN4-208ENST00000404909 SYT5O00445 386 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 SCDO00767 359 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 TM4SF5O14894 197 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 RAD1O60671 282 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 MITFO75030 526 aaPredicted RBP3.42□□□□□ -1.86
RTN4-208ENST00000404909 ICOSLGO75144 302 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 OR2J2O76002 312 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 ZFAND5O76080 213 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 DKK1O94907 266 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 IL33O95760 270 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 CLIC3O95833 236 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 CSTAP01040 98 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 CAPNS1P04632 268 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 ALPLP05186 524 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 H1F0P07305 194 aaKnown RBP3.42□□□□□ -1.86
RTN4-208ENST00000404909 THBS1P07996 1170 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 COX6A1P12074 109 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 CYP4B1P13584 511 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 IFNA8P32881 189 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 DAG1Q14118 895 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 PCOLCEQ15113 449 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 NPTX1Q15818 432 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 CPEB4Q17RY0 729 aaKnown RBP eCLIP3.42□□□□□ -1.86
RTN4-208ENST00000404909 TMCO5AQ8N6Q1 288 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 ZNF527Q8NB42 609 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 OR10G2Q8NGC3 310 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 OR9Q2Q8NGE9 314 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 OR5L2Q8NGL0 311 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 ADAMTS16Q8TE57 1224 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 GIPC3Q8TF64 312 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 SH3YL1Q96HL8 342 aaPredicted RBP3.42□□□□□ -1.86
RTN4-208ENST00000404909 ALPK1Q96QP1 1244 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 SPRY4Q9C004 299 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 SEMA4CQ9C0C4 833 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 UBQLN4Q9NRR5 601 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 SMPD3Q9NY59 655 aaPredicted RBP3.42□□□□□ -1.86
RTN4-208ENST00000404909 CNOT11Q9UKZ1 510 aaKnown RBP3.42□□□□□ -1.86
RTN4-208ENST00000404909 TMCC3Q9ULS5 477 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 A4GNTQ9UNA3 340 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 ORC6Q9Y5N6 252 aa3.42□□□□□ -1.86
RTN4-208ENST00000404909 CACNA1GO43497 2377 aa3.41□□□□□ -1.86
RTN4-208ENST00000404909 LOC101059948A0A1B0GTJ6 334 aa3.41□□□□□ -1.86
RTN4-208ENST00000404909 SERINC4A6NH21 518 aa3.41□□□□□ -1.86
RTN4-208ENST00000404909 C17orf51A8MQB3 221 aa3.41□□□□□ -1.86
RTN4-208ENST00000404909 SCO2O43819 266 aa3.41□□□□□ -1.86
RTN4-208ENST00000404909 OR10H3O60404 316 aa3.41□□□□□ -1.86
RTN4-208ENST00000404909 ZNF354AO60765 605 aaPredicted RBP3.41□□□□□ -1.86
RTN4-208ENST00000404909 UGT2B11O75310 529 aa3.41□□□□□ -1.86
RTN4-208ENST00000404909 NTN1O95631 604 aa3.41□□□□□ -1.86
RTN4-208ENST00000404909 OXSR1O95747 527 aaPredicted RBP3.41□□□□□ -1.86
RTN4-208ENST00000404909 CD63P08962 238 aa3.41□□□□□ -1.86
RTN4-208ENST00000404909 UQCRBP14927 111 aa3.41□□□□□ -1.86
RTN4-208ENST00000404909 RPS4Y1P22090 263 aaKnown RBP3.41□□□□□ -1.86
RTN4-208ENST00000404909 IGFBP5P24593 272 aa3.41□□□□□ -1.86
RTN4-208ENST00000404909 STAT5AP42229 794 aa3.41□□□□□ -1.86
RTN4-208ENST00000404909 GSSP48637 474 aa3.41□□□□□ -1.86
RTN4-208ENST00000404909 FBXW4P57775 412 aa3.41□□□□□ -1.86
RTN4-208ENST00000404909 LSM11P83369 360 aaKnown RBP eCLIP3.41□□□□□ -1.86
RTN4-208ENST00000404909 MED21Q13503 144 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms