RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 TNNI3P19429 210 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 PAICSP22234 425 aaKnown RBP8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 IGFBP4P22692 258 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 C21orf33P30042 268 aaPredicted RBP8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 HTR1FP30939 366 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 TGFBR2P37173 567 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 SLC6A8P48029 635 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 ARRB1P49407 418 aaPredicted RBP8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 CENPAP49450 140 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 ENTPD1P49961 510 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 RNF144AP50876 292 aaPredicted RBP8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 PDX1P52945 283 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 ATP12AP54707 1039 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 ACTC1P68032 377 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 ACTA1P68133 377 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 SIM1P81133 766 aaPredicted RBP8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 ZNF91Q05481 1191 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 BNIP3Q12983 259 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 TPBGQ13641 420 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 SPCS2Q15005 226 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 SMN1Q16637 294 aaKnown RBP8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 SYT16Q17RD7 645 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 SYT14P1Q58G82 188 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 TMPRSS11AQ6ZMR5 421 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 ZNF620Q6ZNG0 422 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 QSOX2Q6ZRP7 698 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 GDF7Q7Z4P5 450 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 RABEPKQ7Z6M1 372 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 OR4N4Q8N0Y3 316 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 LNX2Q8N448 690 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 TCEANCQ8N8B7 351 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 C17orf47Q8NEP4 570 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 ST13P5Q8NFI4 369 aaPredicted RBP8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 OR4D11Q8NGI4 311 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 MCFD2Q8NI22 146 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 TMEM239Q8WW34 195 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 KAT2AQ92830 837 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 CDS1Q92903 461 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 ANKRD9Q96BM1 317 aaPredicted RBP8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 ITPKCQ96DU7 683 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 LRR1Q96L50 414 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 SLC46A1Q96NT5 459 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 CCDC32Q9BV29 185 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 TSSK6Q9BXA6 273 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 SLIRPQ9GZT3 109 aaKnown RBP8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 SP140LQ9H930 580 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 CPNE5Q9HCH3 593 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 AKIP1Q9NQ31 210 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 PRTFDC1Q9NRG1 225 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 TVP23BQ9NYZ1 205 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 RHCGQ9UBD6 479 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 RABL2AQ9UBK7 228 aaPredicted RBP8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 NDRG2Q9UN36 371 aaKnown RBP8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 RABL2BQ9UNT1 228 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 SRPK3Q9UPE1 567 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 HEMK1Q9Y5R4 338 aaPredicted RBP8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 F5P12259 2224 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 CACNA1IQ9P0X4 2223 aa8.1□□□□□ -1.11
SNRNP40-202ENST00000373720 UNC119BA6NIH7 251 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 TMEM150CB9EJG8 249 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 H3BQ06 376 aaPredicted RBP8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 M0R082 166 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 SURF4O15260 269 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 GPR37O15354 613 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 FCMRO60667 390 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 PFDN1O60925 122 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 KCNK2O95069 426 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 EPPINO95925 133 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 HLA-DPB1P04440 258 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 CD1AP06126 327 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 NGFRP08138 427 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 APEHP13798 732 aaKnown RBP8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 GNSP15586 552 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 ST6GAL1P15907 406 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 LIPAP38571 399 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 PPICP45877 212 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 MAP2K4P45985 399 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 ARL4DP49703 201 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 RORCP51449 518 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 MAP2K6P52564 334 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 DEFA1P59665 94 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 DEFA3P59666 94 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 SHC2P98077 582 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 MRPL28Q13084 256 aaKnown RBP8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 SLC13A2Q13183 592 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 MED22Q15528 200 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 PGGHGQ32M88 737 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 AMZ1Q400G9 498 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 PLK5Q496M5 336 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 FLYWCH1Q4VC44 716 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 TRMT12Q53H54 448 aaKnown RBP8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 SPANXN2Q5MJ10 180 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 FAM111BQ6SJ93 734 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 C5orf46Q6UWT4 87 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 HSDL2Q6YN16 418 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 ZNF836Q6ZNA1 936 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 PRR23CQ6ZRP0 262 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 PRICKLE2Q7Z3G6 844 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 PRSS42Q7Z5A4 293 aa8.09□□□□□ -1.11
SNRNP40-202ENST00000373720 VRK2Q86Y07 508 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms