RNA–Protein interactions for RNA: YDR311W

TFB1, Transcript of Subunit of TFIIH and nucleotide excision repair factor 3 complexes, yeast

Gene TFB1, Length 1,929 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB1	YDR311W	DAM1	P53267	343 aa		3.4	□□□□□ -1.86
TFB1	YDR311W	SNP1	Q00916	300 aa	Predicted RBP	3.4	□□□□□ -1.86
TFB1	YDR311W	ECM9	Q02202	377 aa		3.4	□□□□□ -1.86
TFB1	YDR311W	YLR257W	Q06146	321 aa	Known RBP	3.4	□□□□□ -1.86
TFB1	YDR311W	NBA1	Q08229	501 aa	Known RBP	3.4	□□□□□ -1.86
TFB1	YDR311W	KCC4	P25389	1037 aa		3.4	□□□□□ -1.87
TFB1	YDR311W	TRZ1	P36159	838 aa	Predicted RBP	3.4	□□□□□ -1.87
TFB1	YDR311W	KTR4	P38131	464 aa		3.4	□□□□□ -1.87
TFB1	YDR311W	EXO84	P38261	753 aa		3.4	□□□□□ -1.87
TFB1	YDR311W	YHL041W	P38730	149 aa		3.4	□□□□□ -1.87
TFB1	YDR311W	MNN11	P46985	422 aa	Known RBP	3.4	□□□□□ -1.87
TFB1	YDR311W	YJL045W	P47052	634 aa		3.4	□□□□□ -1.87
TFB1	YDR311W	MTC3	P53077	123 aa		3.4	□□□□□ -1.87
TFB1	YDR311W	YDR514C	Q04408	483 aa		3.4	□□□□□ -1.87
TFB1	YDR311W	BRE1	Q07457	700 aa	Known RBP	3.4	□□□□□ -1.87
TFB1	YDR311W	RRP6	Q12149	733 aa	Known RBP	3.4	□□□□□ -1.87
TFB1	YDR311W	RMP1	Q12530	201 aa		3.4	□□□□□ -1.87
TFB1	YDR311W	RPS21A	P0C0V8	87 aa	Known RBP	3.39	□□□□□ -1.87
TFB1	YDR311W	HEM12	P32347	362 aa	Predicted RBP	3.39	□□□□□ -1.87
TFB1	YDR311W	MPE1	P35728	441 aa	Known RBP	3.39	□□□□□ -1.87
TFB1	YDR311W	MAE1	P36013	669 aa	Known RBP	3.39	□□□□□ -1.87
TFB1	YDR311W	BIT2	P38346	545 aa		3.39	□□□□□ -1.87
TFB1	YDR311W	CCT5	P40413	562 aa	Known RBP	3.39	□□□□□ -1.87
TFB1	YDR311W	HIS6	P40545	261 aa		3.39	□□□□□ -1.87
TFB1	YDR311W	HXT16	P47185	567 aa		3.39	□□□□□ -1.87
TFB1	YDR311W	UBC9	P50623	157 aa	Predicted RBP	3.39	□□□□□ -1.87
TFB1	YDR311W	INP52	P50942	1183 aa		3.39	□□□□□ -1.87
TFB1	YDR311W	PHM6	Q05637	104 aa		3.39	□□□□□ -1.87
TFB1	YDR311W	YLR122C	Q12312	125 aa		3.39	□□□□□ -1.87
TFB1	YDR311W	BI4	P03879	638 aa		3.38	□□□□□ -1.87
TFB1	YDR311W	NAM7	P30771	971 aa	Known RBP	3.38	□□□□□ -1.87
TFB1	YDR311W	CCR4	P31384	837 aa	Known RBP	3.38	□□□□□ -1.87
TFB1	YDR311W	DBF20	P32328	564 aa		3.38	□□□□□ -1.87
TFB1	YDR311W	SER1	P33330	395 aa	Known RBP	3.38	□□□□□ -1.87
TFB1	YDR311W	YGR153W	P48238	217 aa		3.38	□□□□□ -1.87
TFB1	YDR311W	GYP7	P48365	746 aa		3.38	□□□□□ -1.87
TFB1	YDR311W	TAD1	P53065	400 aa		3.38	□□□□□ -1.87
TFB1	YDR311W	DOT1	Q04089	582 aa	Known RBP	3.38	□□□□□ -1.87
TFB1	YDR311W	NHX1	Q04121	633 aa		3.38	□□□□□ -1.87
TFB1	YDR311W	COG8	Q04632	607 aa		3.38	□□□□□ -1.87
TFB1	YDR311W	ECM38	Q05902	660 aa	Predicted RBP	3.38	□□□□□ -1.87
TFB1	YDR311W	MLC2	Q06580	163 aa		3.38	□□□□□ -1.87
TFB1	YDR311W	RCL1	Q08096	367 aa	Predicted RBP	3.38	□□□□□ -1.87
TFB1	YDR311W	MDM38	Q08179	573 aa		3.38	□□□□□ -1.87
TFB1	YDR311W	YLL054C	Q12244	843 aa		3.38	□□□□□ -1.87
TFB1	YDR311W	TRP3	P00937	484 aa		3.38	□□□□□ -1.87
TFB1	YDR311W	MPH2	P0CD99	609 aa		3.38	□□□□□ -1.87
TFB1	YDR311W	YCL002C	P25565	263 aa		3.38	□□□□□ -1.87
TFB1	YDR311W	COQ2	P32378	372 aa		3.38	□□□□□ -1.87
TFB1	YDR311W	MRS6	P32864	603 aa	Known RBP	3.38	□□□□□ -1.87
TFB1	YDR311W	SAF1	P38352	637 aa		3.38	□□□□□ -1.87
TFB1	YDR311W	HXT6	P39003	570 aa	Known RBP	3.38	□□□□□ -1.87
TFB1	YDR311W	HXT7	P39004	570 aa		3.38	□□□□□ -1.87
TFB1	YDR311W	RPN3	P40016	523 aa	Known RBP	3.38	□□□□□ -1.87
TFB1	YDR311W	NIT3	P49954	291 aa		3.38	□□□□□ -1.87
TFB1	YDR311W	YKE2	P52553	114 aa		3.38	□□□□□ -1.87
TFB1	YDR311W	SFB2	P53953	876 aa		3.38	□□□□□ -1.87
TFB1	YDR311W	HOS3	Q02959	697 aa	Known RBP	3.38	□□□□□ -1.87
TFB1	YDR311W	LRS4	Q04087	347 aa	Known RBP	3.38	□□□□□ -1.87
TFB1	YDR311W	ENT2	Q05785	613 aa		3.38	□□□□□ -1.87
TFB1	YDR311W	YOR223W	Q12015	292 aa		3.38	□□□□□ -1.87
TFB1	YDR311W	SNF5	P18480	905 aa		3.37	□□□□□ -1.87
TFB1	YDR311W	COX11	P19516	300 aa	Known RBP	3.37	□□□□□ -1.87
TFB1	YDR311W	DAL7	P21826	554 aa		3.37	□□□□□ -1.87
TFB1	YDR311W	CDC48	P25694	835 aa	Known RBP	3.37	□□□□□ -1.87
TFB1	YDR311W	RPN12	P32496	274 aa		3.37	□□□□□ -1.87
TFB1	YDR311W	SCT1	P32784	759 aa		3.37	□□□□□ -1.87
TFB1	YDR311W	NNK1	P36003	928 aa		3.37	□□□□□ -1.87
TFB1	YDR311W	YKL133C	P36066	463 aa		3.37	□□□□□ -1.87
TFB1	YDR311W	KAE1	P36132	386 aa		3.37	□□□□□ -1.87
TFB1	YDR311W	RIM4	P38741	713 aa		3.37	□□□□□ -1.87
TFB1	YDR311W	TDA3	P38758	523 aa		3.37	□□□□□ -1.87
TFB1	YDR311W	GIC1	P38785	314 aa		3.37	□□□□□ -1.87
TFB1	YDR311W	MDG1	P53885	366 aa		3.37	□□□□□ -1.87
TFB1	YDR311W	SRT1	Q03175	343 aa		3.37	□□□□□ -1.87
TFB1	YDR311W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	3.37	□□□□□ -1.87	not detected
TFB1	YDR311W	RPS21B	Q3E754	87 aa	Known RBP	3.37	□□□□□ -1.87
TFB1	YDR311W	MSS18	P08593	268 aa		3.36	□□□□□ -1.87
TFB1	YDR311W	ENA1	P13587	1091 aa		3.36	□□□□□ -1.87
TFB1	YDR311W	YSC84	P32793	468 aa		3.36	□□□□□ -1.87
TFB1	YDR311W	SMY2	P32909	740 aa	Known RBP	3.36	□□□□□ -1.87
TFB1	YDR311W	DID4	P36108	232 aa		3.36	□□□□□ -1.87
TFB1	YDR311W	GPT2	P36148	743 aa		3.36	□□□□□ -1.87
TFB1	YDR311W	YKR073C	P36153	106 aa		3.36	□□□□□ -1.87
TFB1	YDR311W	OMA1	P36163	345 aa		3.36	□□□□□ -1.87
TFB1	YDR311W	RPN10	P38886	268 aa	Known RBP	3.36	□□□□□ -1.87
TFB1	YDR311W	NOC2	P39744	710 aa	Known RBP	3.36	□□□□□ -1.87
TFB1	YDR311W	DOT6	P40059	670 aa	Known RBP	3.36	□□□□□ -1.87
TFB1	YDR311W	YER158C	P40095	573 aa		3.36	□□□□□ -1.87
TFB1	YDR311W	RET2	P43621	546 aa		3.36	□□□□□ -1.87
TFB1	YDR311W	ALY2	P47029	1046 aa		3.36	□□□□□ -1.87
TFB1	YDR311W	ENA2	Q01896	1091 aa		3.36	□□□□□ -1.87
TFB1	YDR311W	ENA5	Q12691	1091 aa		3.36	□□□□□ -1.87
TFB1	YDR311W	PFK1	P16861	987 aa	Known RBP	3.36	□□□□□ -1.87
TFB1	YDR311W	YKR078W	P36158	585 aa	Known RBP	3.36	□□□□□ -1.87
TFB1	YDR311W	AKR1	P39010	764 aa		3.36	□□□□□ -1.87
TFB1	YDR311W	RPT2	P40327	437 aa	Known RBP	3.36	□□□□□ -1.87
TFB1	YDR311W	YML131W	Q03102	365 aa		3.36	□□□□□ -1.87
TFB1	YDR311W	EAR1	Q03212	550 aa		3.36	□□□□□ -1.87
TFB1	YDR311W	MED7	Q08278	222 aa		3.36	□□□□□ -1.87

Retrieved 100 of 5,963 RNA–protein pairs in 54.8 ms