RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 ZNF277Q9NRM2 450 aaPredicted RBP18.19■□□□□ 0.5
LINC00339-211ENST00000641009 TAF1P21675 1872 aa18.19■□□□□ 0.5
LINC00339-211ENST00000641009 DDNO94850 711 aaPredicted RBP18.18■□□□□ 0.5
LINC00339-211ENST00000641009 COPS6Q7L5N1 327 aa18.18■□□□□ 0.5
LINC00339-211ENST00000641009 PPP1R42Q7Z4L9 355 aa18.18■□□□□ 0.5
LINC00339-211ENST00000641009 XAGE3Q8WTP9 111 aa18.18■□□□□ 0.5
LINC00339-211ENST00000641009 RPGRQ92834 1020 aaKnown RBP18.18■□□□□ 0.5
LINC00339-211ENST00000641009 SNED1Q8TER0 1413 aa18.18■□□□□ 0.5
LINC00339-211ENST00000641009 C3orf67Q6ZVT6 689 aa18.17■□□□□ 0.5
LINC00339-211ENST00000641009 RTKN2Q8IZC4 609 aa18.17■□□□□ 0.5
LINC00339-211ENST00000641009 DDX21Q9NR30 783 aaKnown RBP eCLIP18.17■□□□□ 0.5
LINC00339-211ENST00000641009 PARP10Q53GL7 1025 aa18.16■□□□□ 0.5
LINC00339-211ENST00000641009 CHPF2Q9P2E5 772 aa18.16■□□□□ 0.5
LINC00339-211ENST00000641009 APAF1O14727 1248 aa18.15■□□□□ 0.5
LINC00339-211ENST00000641009 HOXA10P31260 410 aaPredicted RBP18.15■□□□□ 0.5
LINC00339-211ENST00000641009 SLC51AQ86UW1 340 aa18.15■□□□□ 0.5
LINC00339-211ENST00000641009 UTP14AQ9BVJ6 771 aaKnown RBP18.15■□□□□ 0.5
LINC00339-211ENST00000641009 DDX60Q8IY21 1712 aaKnown RBP18.15■□□□□ 0.5
LINC00339-211ENST00000641009 HDGFL1Q5TGJ6 251 aa18.14■□□□□ 0.5
LINC00339-211ENST00000641009 SYNE4Q8N205 404 aa18.14■□□□□ 0.5
LINC00339-211ENST00000641009 CFAP44Q96MT7 982 aa18.14■□□□□ 0.5
LINC00339-211ENST00000641009 IARSP41252 1262 aaKnown RBP18.14■□□□□ 0.49
LINC00339-211ENST00000641009 RBM17Q96I25 401 aaKnown RBP18.14■□□□□ 0.49
LINC00339-211ENST00000641009 MBIPQ9NS73 344 aa18.14■□□□□ 0.49
LINC00339-211ENST00000641009 ZNF541Q9H0D2 1346 aa18.13■□□□□ 0.49
LINC00339-211ENST00000641009 COL4A5P29400 1685 aa18.13■□□□□ 0.49
LINC00339-211ENST00000641009 TCERG1O14776 1098 aaKnown RBP18.13■□□□□ 0.49
LINC00339-211ENST00000641009 HSP90AB3PQ58FF7 597 aa18.13■□□□□ 0.49
LINC00339-211ENST00000641009 NLRP10Q86W26 655 aa18.13■□□□□ 0.49
LINC00339-211ENST00000641009 ZNF428Q96B54 188 aa18.13■□□□□ 0.49
LINC00339-211ENST00000641009 NLRP3Q96P20 1036 aa18.13■□□□□ 0.49
LINC00339-211ENST00000641009 CRAMP1Q96RY5 1269 aa18.13■□□□□ 0.49
LINC00339-211ENST00000641009 PPEF1O14829 653 aaPredicted RBP18.12■□□□□ 0.49
LINC00339-211ENST00000641009 HOXB7P09629 217 aa18.12■□□□□ 0.49
LINC00339-211ENST00000641009 POTEIP0CG38 1075 aa18.12■□□□□ 0.49
LINC00339-211ENST00000641009 POTEJP0CG39 1038 aa18.12■□□□□ 0.49
LINC00339-211ENST00000641009 TCIRG1Q13488 830 aa18.12■□□□□ 0.49
LINC00339-211ENST00000641009 DUSP27Q5VZP5 1158 aa18.12■□□□□ 0.49
LINC00339-211ENST00000641009 PSMD1Q99460 953 aa18.12■□□□□ 0.49
LINC00339-211ENST00000641009 ZNF853P0CG23 659 aa18.11■□□□□ 0.49
LINC00339-211ENST00000641009 SLC10A5Q5PT55 438 aa18.11■□□□□ 0.49
LINC00339-211ENST00000641009 CC2D2BQ6DHV5 1058 aa18.11■□□□□ 0.49
LINC00339-211ENST00000641009 HCLS1P14317 486 aaPredicted RBP18.1■□□□□ 0.49
LINC00339-211ENST00000641009 CCDC184Q52MB2 194 aa18.1■□□□□ 0.49
LINC00339-211ENST00000641009 KLRG1Q96E93 195 aa18.1■□□□□ 0.49
LINC00339-211ENST00000641009 L3MBTL3Q96JM7 780 aaPredicted RBP18.1■□□□□ 0.49
LINC00339-211ENST00000641009 DBF4Q9UBU7 674 aaPredicted RBP18.1■□□□□ 0.49
LINC00339-211ENST00000641009 RNF123Q5XPI4 1314 aa18.1■□□□□ 0.49
LINC00339-211ENST00000641009 FZD9O00144 591 aa18.09■□□□□ 0.49
LINC00339-211ENST00000641009 TRMT112Q9UI30 125 aaKnown RBP18.09■□□□□ 0.49
LINC00339-211ENST00000641009 ABCC4O15439 1325 aa18.09■□□□□ 0.49
LINC00339-211ENST00000641009 IQCA1LA6NCM1 817 aa18.08■□□□□ 0.49
LINC00339-211ENST00000641009 ANKRD13DQ6ZTN6 518 aa18.08■□□□□ 0.49
LINC00339-211ENST00000641009 PLBD2Q8NHP8 589 aa18.08■□□□□ 0.49
LINC00339-211ENST00000641009 IFT57Q9NWB7 429 aa18.08■□□□□ 0.49
LINC00339-211ENST00000641009 ADAMTSL1Q8N6G6 1762 aa18.08■□□□□ 0.49
LINC00339-211ENST00000641009 CHADLQ6NUI6 762 aa18.07■□□□□ 0.48
LINC00339-211ENST00000641009 SH3TC1Q8TE82 1336 aa18.07■□□□□ 0.48
LINC00339-211ENST00000641009 JDP2Q8WYK2 163 aa18.07■□□□□ 0.48
LINC00339-211ENST00000641009 TAF1DQ9H5J8 278 aaPredicted RBP18.07■□□□□ 0.48
LINC00339-211ENST00000641009 LTBP1Q14766 1721 aa18.07■□□□□ 0.48
LINC00339-211ENST00000641009 ELL2O00472 640 aaPredicted RBP18.07■□□□□ 0.48
LINC00339-211ENST00000641009 GNAI1P63096 354 aa18.07■□□□□ 0.48
LINC00339-211ENST00000641009 HYPKQ9NX55 129 aa18.07■□□□□ 0.48
LINC00339-211ENST00000641009 ATP5J2-PTCD1G3V325 749 aa18.06■□□□□ 0.48
LINC00339-211ENST00000641009 CALD1Q05682 793 aaKnown RBP18.06■□□□□ 0.48
LINC00339-211ENST00000641009 GRIPAP1Q4V328 841 aa18.06■□□□□ 0.48
LINC00339-211ENST00000641009 LARGE2Q8N3Y3 721 aa18.06■□□□□ 0.48
LINC00339-211ENST00000641009 ATP6V0A2Q9Y487 856 aa18.06■□□□□ 0.48
LINC00339-211ENST00000641009 LRRC37AA6NMS7 1700 aa18.06■□□□□ 0.48
LINC00339-211ENST00000641009 GPC2Q8N158 579 aa18.05■□□□□ 0.48
LINC00339-211ENST00000641009 ISCA1Q9BUE6 129 aa18.05■□□□□ 0.48
LINC00339-211ENST00000641009 HACL1Q9UJ83 578 aa18.05■□□□□ 0.48
LINC00339-211ENST00000641009 EAPPQ56P03 285 aaPredicted RBP18.04■□□□□ 0.48
LINC00339-211ENST00000641009 LDHDQ86WU2 507 aa18.04■□□□□ 0.48
LINC00339-211ENST00000641009 JMYQ8N9B5 988 aa18.04■□□□□ 0.48
LINC00339-211ENST00000641009 C8orf58Q8NAV2 365 aa18.04■□□□□ 0.48
LINC00339-211ENST00000641009 TMX4Q9H1E5 349 aaPredicted RBP18.04■□□□□ 0.48
LINC00339-211ENST00000641009 PHAXQ9H814 394 aaKnown RBP18.04■□□□□ 0.48
LINC00339-211ENST00000641009 GJA3Q9Y6H8 435 aa18.04■□□□□ 0.48
LINC00339-211ENST00000641009 COL4A1P02462 1669 aa18.04■□□□□ 0.48
LINC00339-211ENST00000641009 EPHX2P34913 555 aa18.03■□□□□ 0.48
LINC00339-211ENST00000641009 ZEB1P37275 1124 aaPredicted RBP18.03■□□□□ 0.48
LINC00339-211ENST00000641009 EIF6P56537 245 aaKnown RBP18.03■□□□□ 0.48
LINC00339-211ENST00000641009 DDX46Q7L014 1031 aaKnown RBP18.03■□□□□ 0.48
LINC00339-211ENST00000641009 FAM89AQ96GI7 184 aa18.03■□□□□ 0.48
LINC00339-211ENST00000641009 PPIP5K2O43314 1243 aa18.02■□□□□ 0.48
LINC00339-211ENST00000641009 BBOX1O75936 387 aa18.02■□□□□ 0.48
LINC00339-211ENST00000641009 AOC3Q16853 763 aa18.02■□□□□ 0.48
LINC00339-211ENST00000641009 RTL5Q5HYW3 569 aaPredicted RBP18.02■□□□□ 0.48
LINC00339-211ENST00000641009 GRAPQ13588 217 aa18.01■□□□□ 0.47
LINC00339-211ENST00000641009 RIC3Q7Z5B4 369 aa18.01■□□□□ 0.47
LINC00339-211ENST00000641009 GRAPLQ8TC17 118 aaPredicted RBP18.01■□□□□ 0.47
LINC00339-211ENST00000641009 CLEC11AQ9Y240 323 aa18.01■□□□□ 0.47
LINC00339-211ENST00000641009 DUOX1Q9NRD9 1551 aa18.01■□□□□ 0.47
LINC00339-211ENST00000641009 GOLGA2Q08379 1002 aa18.01■□□□□ 0.47
LINC00339-211ENST00000641009 DPP8Q6V1X1 898 aaPredicted RBP18.01■□□□□ 0.47
LINC00339-211ENST00000641009 SP8Q8IXZ3 490 aa18.01■□□□□ 0.47
LINC00339-211ENST00000641009 NIM1KQ8IY84 436 aa18.01■□□□□ 0.47
LINC00339-211ENST00000641009 TSPYL6Q8N831 410 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms