RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 ZBTB3Q9H5J0 574 aa25.69■■□□□ 1.7
CLN3-262ENST00000637699 NUP98P52948 1817 aa25.68■■□□□ 1.7
CLN3-262ENST00000637699 CC2D2BQ6DHV5 1058 aa25.68■■□□□ 1.7
CLN3-262ENST00000637699 AIDAQ96BJ3 306 aa25.68■■□□□ 1.7
CLN3-262ENST00000637699 SNED1Q8TER0 1413 aa25.68■■□□□ 1.7
CLN3-262ENST00000637699 DLG5Q8TDM6 1919 aa25.67■■□□□ 1.7
CLN3-262ENST00000637699 TCERG1O14776 1098 aaKnown RBP25.67■■□□□ 1.7
CLN3-262ENST00000637699 EIF6P56537 245 aaKnown RBP25.67■■□□□ 1.7
CLN3-262ENST00000637699 SUSD4Q5VX71 490 aa25.67■■□□□ 1.7
CLN3-262ENST00000637699 ADAMTSL1Q8N6G6 1762 aa25.67■■□□□ 1.7
CLN3-262ENST00000637699 UBN2Q6ZU65 1347 aa25.66■■□□□ 1.7
CLN3-262ENST00000637699 HOXA10P31260 410 aaPredicted RBP25.66■■□□□ 1.7
CLN3-262ENST00000637699 KDM3BQ7LBC6 1761 aa25.66■■□□□ 1.7
CLN3-262ENST00000637699 CTCFP49711 727 aaPredicted RBP25.65■■□□□ 1.7
CLN3-262ENST00000637699 NFE2L2Q16236 605 aa25.65■■□□□ 1.7
CLN3-262ENST00000637699 SLC51AQ86UW1 340 aa25.65■■□□□ 1.7
CLN3-262ENST00000637699 PLEKHF1Q96S99 279 aa25.65■■□□□ 1.7
CLN3-262ENST00000637699 PRDM10Q9NQV6 1147 aa25.65■■□□□ 1.7
CLN3-262ENST00000637699 DEFB115Q30KQ5 88 aa25.64■■□□□ 1.7
CLN3-262ENST00000637699 LARGE2Q8N3Y3 721 aa25.64■■□□□ 1.7
CLN3-262ENST00000637699 RBM17Q96I25 401 aaKnown RBP25.64■■□□□ 1.7
CLN3-262ENST00000637699 COL4A5P29400 1685 aa25.64■■□□□ 1.69
CLN3-262ENST00000637699 LMOD1P29536 600 aaPredicted RBP25.63■■□□□ 1.69
CLN3-262ENST00000637699 ZNF34Q8IZ26 560 aa25.63■■□□□ 1.69
CLN3-262ENST00000637699 WBP1LQ9NX94 342 aa25.63■■□□□ 1.69
CLN3-262ENST00000637699 RASSF10A6NK89 507 aa25.62■■□□□ 1.69
CLN3-262ENST00000637699 PPEF1O14829 653 aaPredicted RBP25.62■■□□□ 1.69
CLN3-262ENST00000637699 C3orf67Q6ZVT6 689 aa25.62■■□□□ 1.69
CLN3-262ENST00000637699 CRAMP1Q96RY5 1269 aa25.62■■□□□ 1.69
CLN3-262ENST00000637699 ABT1Q9ULW3 272 aaKnown RBP25.62■■□□□ 1.69
CLN3-262ENST00000637699 IBTKQ9P2D0 1353 aaPredicted RBP25.61■■□□□ 1.69
CLN3-262ENST00000637699 NTSR2O95665 410 aa25.61■■□□□ 1.69
CLN3-262ENST00000637699 GRIPAP1Q4V328 841 aa25.61■■□□□ 1.69
CLN3-262ENST00000637699 GIGYF2Q6Y7W6 1299 aaKnown RBP25.61■■□□□ 1.69
CLN3-262ENST00000637699 RIC1Q4ADV7 1423 aa25.61■■□□□ 1.69
CLN3-262ENST00000637699 EPS15P42566 896 aa25.6■■□□□ 1.69
CLN3-262ENST00000637699 LBX1P52954 281 aa25.6■■□□□ 1.69
CLN3-262ENST00000637699 MAPK8IP3Q9UPT6 1336 aa25.6■■□□□ 1.69
CLN3-262ENST00000637699 SCNN1DP51172 638 aa25.59■■□□□ 1.69
CLN3-262ENST00000637699 PPP1R42Q7Z4L9 355 aa25.59■■□□□ 1.69
CLN3-262ENST00000637699 DDX21Q9NR30 783 aaKnown RBP eCLIP25.59■■□□□ 1.69
CLN3-262ENST00000637699 FMR1Q06787 632 aaKnown RBP eCLIP25.58■■□□□ 1.69
CLN3-262ENST00000637699 NIM1KQ8IY84 436 aa25.58■■□□□ 1.69
CLN3-262ENST00000637699 TSPYL4Q9UJ04 414 aa25.58■■□□□ 1.69
CLN3-262ENST00000637699 WDR33Q9C0J8 1336 aaKnown RBP25.58■■□□□ 1.69
CLN3-262ENST00000637699 LTBP1Q14766 1721 aa25.57■■□□□ 1.68
CLN3-262ENST00000637699 EIF2S2P20042 333 aaKnown RBP25.57■■□□□ 1.68
CLN3-262ENST00000637699 NLRP3Q96P20 1036 aa25.57■■□□□ 1.68
CLN3-262ENST00000637699 TMX4Q9H1E5 349 aaPredicted RBP25.57■■□□□ 1.68
CLN3-262ENST00000637699 PNNQ9H307 717 aaKnown RBP25.57■■□□□ 1.68
CLN3-262ENST00000637699 ERBB4Q15303 1308 aa25.57■■□□□ 1.68
CLN3-262ENST00000637699 PPIP5K2O43314 1243 aa25.56■■□□□ 1.68
CLN3-262ENST00000637699 PARP10Q53GL7 1025 aa25.56■■□□□ 1.68
CLN3-262ENST00000637699 AOC3Q16853 763 aa25.55■■□□□ 1.68
CLN3-262ENST00000637699 UTP14AQ9BVJ6 771 aaKnown RBP25.55■■□□□ 1.68
CLN3-262ENST00000637699 ANXA1P04083 346 aa25.54■■□□□ 1.68
CLN3-262ENST00000637699 MAP2K1Q02750 393 aaPredicted RBP25.54■■□□□ 1.68
CLN3-262ENST00000637699 PDIA6Q15084 440 aa25.54■■□□□ 1.68
CLN3-262ENST00000637699 PAXIP1Q6ZW49 1069 aaPredicted RBP25.54■■□□□ 1.68
CLN3-262ENST00000637699 USP50Q70EL3 339 aaPredicted RBP25.54■■□□□ 1.68
CLN3-262ENST00000637699 ATP6V0A2Q9Y487 856 aa25.54■■□□□ 1.68
CLN3-262ENST00000637699 TRAF5O00463 557 aa25.53■■□□□ 1.68
CLN3-262ENST00000637699 HSPA8P11142 646 aaKnown RBP25.53■■□□□ 1.68
CLN3-262ENST00000637699 PROSER3Q2NL68 480 aa25.53■■□□□ 1.68
CLN3-262ENST00000637699 LRP10Q7Z4F1 713 aa25.53■■□□□ 1.68
CLN3-262ENST00000637699 GRM1Q13255 1194 aa25.52■■□□□ 1.68
CLN3-262ENST00000637699 SLC10A5Q5PT55 438 aa25.52■■□□□ 1.68
CLN3-262ENST00000637699 RIPK4P57078 832 aa25.51■■□□□ 1.67
CLN3-262ENST00000637699 ABCC4O15439 1325 aa25.51■■□□□ 1.67
CLN3-262ENST00000637699 CST9Q5W186 159 aa25.5■■□□□ 1.67
CLN3-262ENST00000637699 NECTIN2Q92692 538 aa25.5■■□□□ 1.67
CLN3-262ENST00000637699 CAPNS2Q96L46 248 aa25.5■■□□□ 1.67
CLN3-262ENST00000637699 CXCL9Q07325 125 aa25.49■■□□□ 1.67
CLN3-262ENST00000637699 AIMP1Q12904 312 aaKnown RBP25.49■■□□□ 1.67
CLN3-262ENST00000637699 CYP4F22Q6NT55 531 aa25.49■■□□□ 1.67
CLN3-262ENST00000637699 VPS33BQ9H267 617 aa25.49■■□□□ 1.67
CLN3-262ENST00000637699 ADARB2Q9NS39 739 aaKnown RBP25.49■■□□□ 1.67
CLN3-262ENST00000637699 GPRC5DQ9NZD1 345 aa25.49■■□□□ 1.67
CLN3-262ENST00000637699 ZNRF3Q9ULT6 936 aa25.49■■□□□ 1.67
CLN3-262ENST00000637699 HCLS1P14317 486 aaPredicted RBP25.48■■□□□ 1.67
CLN3-262ENST00000637699 ECE1P42892 770 aa25.48■■□□□ 1.67
CLN3-262ENST00000637699 DPP8Q6V1X1 898 aaPredicted RBP25.48■■□□□ 1.67
CLN3-262ENST00000637699 COPS6Q7L5N1 327 aa25.48■■□□□ 1.67
CLN3-262ENST00000637699 SUPT20HQ8NEM7 779 aa25.48■■□□□ 1.67
CLN3-262ENST00000637699 BBOX1O75936 387 aa25.47■■□□□ 1.67
CLN3-262ENST00000637699 GPR101Q96P66 508 aaPredicted RBP25.47■■□□□ 1.67
CLN3-262ENST00000637699 RTFDC1Q9BY42 306 aaPredicted RBP25.47■■□□□ 1.67
CLN3-262ENST00000637699 GMPSP49915 693 aaPredicted RBP25.46■■□□□ 1.67
CLN3-262ENST00000637699 NLRP10Q86W26 655 aa25.46■■□□□ 1.67
CLN3-262ENST00000637699 SP8Q8IXZ3 490 aa25.46■■□□□ 1.67
CLN3-262ENST00000637699 MPNDQ8N594 471 aa25.46■■□□□ 1.67
CLN3-262ENST00000637699 XAGE3Q8WTP9 111 aa25.46■■□□□ 1.67
CLN3-262ENST00000637699 HSP90AB3PQ58FF7 597 aa25.45■■□□□ 1.66
CLN3-262ENST00000637699 BEGAINQ9BUH8 593 aa25.45■■□□□ 1.66
CLN3-262ENST00000637699 TRMT112Q9UI30 125 aaKnown RBP25.45■■□□□ 1.66
CLN3-262ENST00000637699 TLL2Q9Y6L7 1015 aa25.45■■□□□ 1.66
CLN3-262ENST00000637699 TRPM7Q96QT4 1865 aa25.45■■□□□ 1.66
CLN3-262ENST00000637699 ZNF428Q96B54 188 aa25.44■■□□□ 1.66
CLN3-262ENST00000637699 BABAM1Q9NWV8 329 aa25.44■■□□□ 1.66
CLN3-262ENST00000637699 RAD17O75943 681 aa25.43■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms