RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 THUMPD2Q9BTF0 503 aaKnown RBP23.55■■□□□ 1.36
CIITA-215ENST00000637439 ZBTB3Q9H5J0 574 aa23.55■■□□□ 1.36
CIITA-215ENST00000637439 CLEC11AQ9Y240 323 aa23.55■■□□□ 1.36
CIITA-215ENST00000637439 CNTNAP1P78357 1384 aa23.54■■□□□ 1.36
CIITA-215ENST00000637439 SNED1Q8TER0 1413 aa23.54■■□□□ 1.36
CIITA-215ENST00000637439 GPTP24298 496 aa23.54■■□□□ 1.36
CIITA-215ENST00000637439 GIGYF2Q6Y7W6 1299 aaKnown RBP23.54■■□□□ 1.36
CIITA-215ENST00000637439 ZNF34Q8IZ26 560 aa23.54■■□□□ 1.36
CIITA-215ENST00000637439 RBM17Q96I25 401 aaKnown RBP23.54■■□□□ 1.36
CIITA-215ENST00000637439 UBN2Q6ZU65 1347 aa23.54■■□□□ 1.36
CIITA-215ENST00000637439 TMEM88BA6NKF7 163 aa23.53■■□□□ 1.36
CIITA-215ENST00000637439 ITGBL1O95965 494 aaPredicted RBP23.53■■□□□ 1.36
CIITA-215ENST00000637439 SUSD4Q5VX71 490 aa23.53■■□□□ 1.36
CIITA-215ENST00000637439 PPP1R42Q7Z4L9 355 aa23.53■■□□□ 1.36
CIITA-215ENST00000637439 CRAMP1Q96RY5 1269 aa23.53■■□□□ 1.36
CIITA-215ENST00000637439 EIF6P56537 245 aaKnown RBP23.52■■□□□ 1.36
CIITA-215ENST00000637439 PARP10Q53GL7 1025 aa23.52■■□□□ 1.36
CIITA-215ENST00000637439 TSPYL4Q9UJ04 414 aa23.52■■□□□ 1.36
CIITA-215ENST00000637439 RNF123Q5XPI4 1314 aa23.52■■□□□ 1.36
CIITA-215ENST00000637439 ADAMTSL1Q8N6G6 1762 aa23.52■■□□□ 1.36
CIITA-215ENST00000637439 NTSR2O95665 410 aa23.51■■□□□ 1.35
CIITA-215ENST00000637439 BABAM1Q9NWV8 329 aa23.51■■□□□ 1.35
CIITA-215ENST00000637439 CAPN15O75808 1086 aa23.5■■□□□ 1.35
CIITA-215ENST00000637439 TMX4Q9H1E5 349 aaPredicted RBP23.5■■□□□ 1.35
CIITA-215ENST00000637439 PPEF1O14829 653 aaPredicted RBP23.49■■□□□ 1.35
CIITA-215ENST00000637439 NLRP3Q96P20 1036 aa23.49■■□□□ 1.35
CIITA-215ENST00000637439 LMOD1P29536 600 aaPredicted RBP23.48■■□□□ 1.35
CIITA-215ENST00000637439 RIPK4P57078 832 aa23.48■■□□□ 1.35
CIITA-215ENST00000637439 LMOD3Q0VAK6 560 aa23.48■■□□□ 1.35
CIITA-215ENST00000637439 CNTROBQ8N137 903 aa23.48■■□□□ 1.35
CIITA-215ENST00000637439 LARGE2Q8N3Y3 721 aa23.48■■□□□ 1.35
CIITA-215ENST00000637439 GJA3Q9Y6H8 435 aa23.47■■□□□ 1.35
CIITA-215ENST00000637439 EIF2S2P20042 333 aaKnown RBP23.46■■□□□ 1.35
CIITA-215ENST00000637439 RALBP1Q15311 655 aa23.46■■□□□ 1.35
CIITA-215ENST00000637439 UTP14AQ9BVJ6 771 aaKnown RBP23.46■■□□□ 1.35
CIITA-215ENST00000637439 VPS33BQ9H267 617 aa23.46■■□□□ 1.35
CIITA-215ENST00000637439 VEGFBP49765 207 aa23.45■■□□□ 1.34
CIITA-215ENST00000637439 PDIA6Q15084 440 aa23.45■■□□□ 1.34
CIITA-215ENST00000637439 SLC10A5Q5PT55 438 aa23.45■■□□□ 1.34
CIITA-215ENST00000637439 MAP1SQ66K74 1059 aaPredicted RBP23.45■■□□□ 1.34
CIITA-215ENST00000637439 LRP10Q7Z4F1 713 aa23.45■■□□□ 1.34
CIITA-215ENST00000637439 AIDAQ96BJ3 306 aa23.45■■□□□ 1.34
CIITA-215ENST00000637439 COL4A5P29400 1685 aa23.44■■□□□ 1.34
CIITA-215ENST00000637439 HSP90AB3PQ58FF7 597 aa23.44■■□□□ 1.34
CIITA-215ENST00000637439 NIM1KQ8IY84 436 aa23.44■■□□□ 1.34
CIITA-215ENST00000637439 TCERG1O14776 1098 aaKnown RBP23.43■■□□□ 1.34
CIITA-215ENST00000637439 TMPOP42166 694 aaKnown RBP23.43■■□□□ 1.34
CIITA-215ENST00000637439 PRDM10Q9NQV6 1147 aa23.43■■□□□ 1.34
CIITA-215ENST00000637439 ATP6V0A2Q9Y487 856 aa23.43■■□□□ 1.34
CIITA-215ENST00000637439 RASSF10A6NK89 507 aa23.42■■□□□ 1.34
CIITA-215ENST00000637439 FOXN1O15353 648 aa23.42■■□□□ 1.34
CIITA-215ENST00000637439 DEFB115Q30KQ5 88 aa23.42■■□□□ 1.34
CIITA-215ENST00000637439 C3orf67Q6ZVT6 689 aa23.42■■□□□ 1.34
CIITA-215ENST00000637439 SUPT20HQ8NEM7 779 aa23.42■■□□□ 1.34
CIITA-215ENST00000637439 PPIP5K2O43314 1243 aa23.41■■□□□ 1.34
CIITA-215ENST00000637439 CTCFP49711 727 aaPredicted RBP23.41■■□□□ 1.34
CIITA-215ENST00000637439 SCNN1DP51172 638 aa23.41■■□□□ 1.34
CIITA-215ENST00000637439 USP50Q70EL3 339 aaPredicted RBP23.41■■□□□ 1.34
CIITA-215ENST00000637439 ANKRD36CQ5JPF3 1778 aa23.4■■□□□ 1.34
CIITA-215ENST00000637439 BBOX1O75936 387 aa23.4■■□□□ 1.34
CIITA-215ENST00000637439 PROSER3Q2NL68 480 aa23.4■■□□□ 1.34
CIITA-215ENST00000637439 ABCC4O15439 1325 aa23.39■■□□□ 1.34
CIITA-215ENST00000637439 ANXA1P04083 346 aa23.39■■□□□ 1.33
CIITA-215ENST00000637439 EPS15P42566 896 aa23.39■■□□□ 1.33
CIITA-215ENST00000637439 COPS6Q7L5N1 327 aa23.39■■□□□ 1.33
CIITA-215ENST00000637439 DDX21Q9NR30 783 aaKnown RBP eCLIP23.39■■□□□ 1.33
CIITA-215ENST00000637439 ABT1Q9ULW3 272 aaKnown RBP23.39■■□□□ 1.33
CIITA-215ENST00000637439 LTBP1Q14766 1721 aa23.39■■□□□ 1.33
CIITA-215ENST00000637439 AOC3Q16853 763 aa23.38■■□□□ 1.33
CIITA-215ENST00000637439 RTFDC1Q9BY42 306 aaPredicted RBP23.38■■□□□ 1.33
CIITA-215ENST00000637439 WBP1LQ9NX94 342 aa23.38■■□□□ 1.33
CIITA-215ENST00000637439 AIMP1Q12904 312 aaKnown RBP23.37■■□□□ 1.33
CIITA-215ENST00000637439 TCIRG1Q13488 830 aa23.37■■□□□ 1.33
CIITA-215ENST00000637439 NLRP10Q86W26 655 aa23.37■■□□□ 1.33
CIITA-215ENST00000637439 SP8Q8IXZ3 490 aa23.37■■□□□ 1.33
CIITA-215ENST00000637439 XAGE3Q8WTP9 111 aa23.37■■□□□ 1.33
CIITA-215ENST00000637439 ZNRF3Q9ULT6 936 aa23.37■■□□□ 1.33
CIITA-215ENST00000637439 MAP2K1Q02750 393 aaPredicted RBP23.36■■□□□ 1.33
CIITA-215ENST00000637439 DPP8Q6V1X1 898 aaPredicted RBP23.36■■□□□ 1.33
CIITA-215ENST00000637439 DDX46Q7L014 1031 aaKnown RBP23.36■■□□□ 1.33
CIITA-215ENST00000637439 TRMT112Q9UI30 125 aaKnown RBP23.36■■□□□ 1.33
CIITA-215ENST00000637439 SH3TC1Q8TE82 1336 aa23.35■■□□□ 1.33
CIITA-215ENST00000637439 WDR33Q9C0J8 1336 aaKnown RBP23.35■■□□□ 1.33
CIITA-215ENST00000637439 LAMB2P55268 1798 aa23.35■■□□□ 1.33
CIITA-215ENST00000637439 CHL1O00533 1208 aa23.35■■□□□ 1.33
CIITA-215ENST00000637439 SLC51AQ86UW1 340 aa23.35■■□□□ 1.33
CIITA-215ENST00000637439 MPNDQ8N594 471 aa23.35■■□□□ 1.33
CIITA-215ENST00000637439 NECTIN2Q92692 538 aa23.35■■□□□ 1.33
CIITA-215ENST00000637439 ADARB2Q9NS39 739 aaKnown RBP23.35■■□□□ 1.33
CIITA-215ENST00000637439 GPRC5DQ9NZD1 345 aa23.35■■□□□ 1.33
CIITA-215ENST00000637439 HCLS1P14317 486 aaPredicted RBP23.34■■□□□ 1.33
CIITA-215ENST00000637439 MYBBP1AQ9BQG0 1328 aaKnown RBP23.33■■□□□ 1.33
CIITA-215ENST00000637439 CXCL9Q07325 125 aa23.33■■□□□ 1.33
CIITA-215ENST00000637439 NEUROD2Q15784 382 aa23.33■■□□□ 1.33
CIITA-215ENST00000637439 TMC4Q7Z404 712 aa23.33■■□□□ 1.33
CIITA-215ENST00000637439 TRPM7Q96QT4 1865 aa23.32■■□□□ 1.32
CIITA-215ENST00000637439 ECE1P42892 770 aa23.32■■□□□ 1.32
CIITA-215ENST00000637439 KIAA2012Q0VF49 1180 aa23.32■■□□□ 1.32
CIITA-215ENST00000637439 GRAPQ13588 217 aa23.32■■□□□ 1.32
CIITA-215ENST00000637439 GRAPLQ8TC17 118 aaPredicted RBP23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms