RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 CCDC24Q8N4L8 307 aa15.18■□□□□ 0.02
CLN3-257ENST00000637110 PDE4DIPQ5VU43 2346 aa15.18■□□□□ 0.02
CLN3-257ENST00000637110 KDM3BQ7LBC6 1761 aa15.18■□□□□ 0.02
CLN3-257ENST00000637110 PRR5LQ6MZQ0 368 aa15.17■□□□□ 0.02
CLN3-257ENST00000637110 PAXIP1Q6ZW49 1069 aaPredicted RBP15.17■□□□□ 0.02
CLN3-257ENST00000637110 BABAM1Q9NWV8 329 aa15.17■□□□□ 0.02
CLN3-257ENST00000637110 FAM177BA6PVY3 158 aa15.16■□□□□ 0.02
CLN3-257ENST00000637110 APAF1O14727 1248 aa15.16■□□□□ 0.02
CLN3-257ENST00000637110 ST5P78524 1137 aa15.16■□□□□ 0.02
CLN3-257ENST00000637110 CCDC93Q567U6 631 aa15.16■□□□□ 0.02
CLN3-257ENST00000637110 MAP1SQ66K74 1059 aaPredicted RBP15.16■□□□□ 0.02
CLN3-257ENST00000637110 KIF6Q6ZMV9 814 aa15.16■□□□□ 0.02
CLN3-257ENST00000637110 CNBD1Q8NA66 436 aa15.16■□□□□ 0.02
CLN3-257ENST00000637110 MASTLQ96GX5 879 aa15.16■□□□□ 0.02
CLN3-257ENST00000637110 TRIM35Q9UPQ4 493 aa15.16■□□□□ 0.02
CLN3-257ENST00000637110 SCN7AQ01118 1682 aa15.16■□□□□ 0.02
CLN3-257ENST00000637110 CLEC4GQ6UXB4 293 aa15.15■□□□□ 0.02
CLN3-257ENST00000637110 NBPF5PQ86XG9 351 aaPredicted RBP15.15■□□□□ 0.02
CLN3-257ENST00000637110 NECTIN2Q92692 538 aa15.15■□□□□ 0.02
CLN3-257ENST00000637110 CAPNS2Q96L46 248 aa15.15■□□□□ 0.02
CLN3-257ENST00000637110 MRS2Q9HD23 443 aa15.15■□□□□ 0.02
CLN3-257ENST00000637110 NIP7Q9Y221 180 aaKnown RBP eCLIP15.15■□□□□ 0.02
CLN3-257ENST00000637110 LAMB4A4D0S4 1761 aa15.14■□□□□ 0.01
CLN3-257ENST00000637110 SRGNP10124 158 aa15.14■□□□□ 0.01
CLN3-257ENST00000637110 GTF2E1P29083 439 aaPredicted RBP15.14■□□□□ 0.01
CLN3-257ENST00000637110 CCDC184Q52MB2 194 aa15.14■□□□□ 0.01
CLN3-257ENST00000637110 GPR101Q96P66 508 aaPredicted RBP15.14■□□□□ 0.01
CLN3-257ENST00000637110 DDX21Q9NR30 783 aaKnown RBP eCLIP15.14■□□□□ 0.01
CLN3-257ENST00000637110 ZNF541Q9H0D2 1346 aa15.14■□□□□ 0.01
CLN3-257ENST00000637110 CA12O43570 354 aa15.13■□□□□ 0.01
CLN3-257ENST00000637110 FKBP4Q02790 459 aaKnown RBP eCLIP15.13■□□□□ 0.01
CLN3-257ENST00000637110 HLFQ16534 295 aa15.13■□□□□ 0.01
CLN3-257ENST00000637110 ZBTB3Q9H5J0 574 aa15.13■□□□□ 0.01
CLN3-257ENST00000637110 RNF123Q5XPI4 1314 aa15.13■□□□□ 0.01
CLN3-257ENST00000637110 TRPM7Q96QT4 1865 aa15.12■□□□□ 0.01
CLN3-257ENST00000637110 CHL1O00533 1208 aa15.12■□□□□ 0.01
CLN3-257ENST00000637110 CALD1Q05682 793 aaKnown RBP15.12■□□□□ 0.01
CLN3-257ENST00000637110 GRM1Q13255 1194 aa15.12■□□□□ 0.01
CLN3-257ENST00000637110 TPTE2Q6XPS3 522 aa15.12■□□□□ 0.01
CLN3-257ENST00000637110 TTLL7Q6ZT98 887 aa15.12■□□□□ 0.01
CLN3-257ENST00000637110 MCOLN1Q9GZU1 580 aa15.12■□□□□ 0.01
CLN3-257ENST00000637110 ERBB4Q15303 1308 aa15.12■□□□□ 0.01
CLN3-257ENST00000637110 MAP2K2P36507 400 aa15.11■□□□□ 0.01
CLN3-257ENST00000637110 RTKN2Q8IZC4 609 aa15.11■□□□□ 0.01
CLN3-257ENST00000637110 GPC2Q8N158 579 aa15.11■□□□□ 0.01
CLN3-257ENST00000637110 ZNF277Q9NRM2 450 aaPredicted RBP15.11■□□□□ 0.01
CLN3-257ENST00000637110 MAP3K15Q6ZN16 1313 aa15.11■□□□□ 0.01
CLN3-257ENST00000637110 BCORQ6W2J9 1755 aa15.11■□□□□ 0.01
CLN3-257ENST00000637110 ERVV-1B6SEH8 477 aa15.1■□□□□ 0.01
CLN3-257ENST00000637110 ANXA1P04083 346 aa15.1■□□□□ 0.01
CLN3-257ENST00000637110 LMOD1P29536 600 aaPredicted RBP15.1■□□□□ 0.01
CLN3-257ENST00000637110 AIMP1Q12904 312 aaKnown RBP15.1■□□□□ 0.01
CLN3-257ENST00000637110 KRT24Q2M2I5 525 aa15.1■□□□□ 0.01
CLN3-257ENST00000637110 CYP4F22Q6NT55 531 aa15.1■□□□□ 0.01
CLN3-257ENST00000637110 CASP8AP2Q9UKL3 1982 aa15.09■□□□□ 0.01
CLN3-257ENST00000637110 RGL2O15211 777 aa15.09■□□□□ 0.01
CLN3-257ENST00000637110 GPTP24298 496 aa15.09■□□□□ 0.01
CLN3-257ENST00000637110 C7orf43Q8WVR3 580 aa15.09■□□□□ 0.01
CLN3-257ENST00000637110 TNRC18O15417 2968 aaPredicted RBP15.09■□□□□ 0.01
CLN3-257ENST00000637110 LTBP1Q14766 1721 aa15.09■□□□□ 0.01
CLN3-257ENST00000637110 FZD9O00144 591 aa15.08■□□□□ 0
CLN3-257ENST00000637110 NPR1P16066 1061 aa15.08■□□□□ 0
CLN3-257ENST00000637110 IARSP41252 1262 aaKnown RBP15.08■□□□□ 0
CLN3-257ENST00000637110 GNAI1P63096 354 aa15.08■□□□□ 0
CLN3-257ENST00000637110 HDGFL1Q5TGJ6 251 aa15.08■□□□□ 0
CLN3-257ENST00000637110 JDP2Q8WYK2 163 aa15.08■□□□□ 0
CLN3-257ENST00000637110 MBIPQ9NS73 344 aa15.08■□□□□ 0
CLN3-257ENST00000637110 TSKSQ9UJT2 592 aa15.08■□□□□ 0
CLN3-257ENST00000637110 DGKZQ13574 1117 aa15.07■□□□□ 0
CLN3-257ENST00000637110 PDIA6Q15084 440 aa15.07■□□□□ 0
CLN3-257ENST00000637110 PROSER3Q2NL68 480 aa15.07■□□□□ 0
CLN3-257ENST00000637110 COPS6Q7L5N1 327 aa15.07■□□□□ 0
CLN3-257ENST00000637110 NYXQ9GZU5 481 aa15.07■□□□□ 0
CLN3-257ENST00000637110 IFT57Q9NWB7 429 aa15.07■□□□□ 0
CLN3-257ENST00000637110 TLL2Q9Y6L7 1015 aa15.07■□□□□ 0
CLN3-257ENST00000637110 ELL2O00472 640 aaPredicted RBP15.06■□□□□ 0
CLN3-257ENST00000637110 EIF6P56537 245 aaKnown RBP15.06■□□□□ 0
CLN3-257ENST00000637110 DUSP27Q5VZP5 1158 aa15.06■□□□□ 0
CLN3-257ENST00000637110 GIGYF2Q6Y7W6 1299 aaKnown RBP15.06■□□□□ 0
CLN3-257ENST00000637110 XAGE3Q8WTP9 111 aa15.06■□□□□ 0
CLN3-257ENST00000637110 SALL2Q9Y467 1007 aaPredicted RBP15.06■□□□□ 0
CLN3-257ENST00000637110 BRPF1P55201 1214 aaPredicted RBP15.05■□□□□ -0
CLN3-257ENST00000637110 NUTM1Q86Y26 1132 aa15.05■□□□□ -0
CLN3-257ENST00000637110 FAM9BQ8IZU0 186 aa15.05■□□□□ -0
CLN3-257ENST00000637110 CHPF2Q9P2E5 772 aa15.05■□□□□ -0
CLN3-257ENST00000637110 NUP98P52948 1817 aa15.04■□□□□ -0
CLN3-257ENST00000637110 AOC2O75106 756 aa15.04■□□□□ -0
CLN3-257ENST00000637110 HOXB7P09629 217 aa15.04■□□□□ -0
CLN3-257ENST00000637110 SUSD4Q5VX71 490 aa15.04■□□□□ -0
CLN3-257ENST00000637110 USP50Q70EL3 339 aaPredicted RBP15.04■□□□□ -0
CLN3-257ENST00000637110 PPP1R42Q7Z4L9 355 aa15.04■□□□□ -0
CLN3-257ENST00000637110 SYNE4Q8N205 404 aa15.04■□□□□ -0
CLN3-257ENST00000637110 DBF4Q9UBU7 674 aaPredicted RBP15.04■□□□□ -0
CLN3-257ENST00000637110 GJA3Q9Y6H8 435 aa15.04■□□□□ -0
CLN3-257ENST00000637110 ZNF853P0CG23 659 aa15.03■□□□□ -0
CLN3-257ENST00000637110 ALDH1B1P30837 517 aa15.03■□□□□ -0
CLN3-257ENST00000637110 PARP10Q53GL7 1025 aa15.03■□□□□ -0
CLN3-257ENST00000637110 HSP90AB3PQ58FF7 597 aa15.03■□□□□ -0
CLN3-257ENST00000637110 CST9Q5W186 159 aa15.03■□□□□ -0
CLN3-257ENST00000637110 UBN2Q6ZU65 1347 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms