RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 CPLX2Q6PUV4 134 aaKnown RBP12.89□□□□□ -0.35
CLN3-244ENST00000636147 NEK1Q96PY6 1258 aa12.89□□□□□ -0.35
CLN3-244ENST00000636147 RGS12O14924 1447 aa12.89□□□□□ -0.35
CLN3-244ENST00000636147 BTBD11A6QL63 1104 aa12.89□□□□□ -0.35
CLN3-244ENST00000636147 LMAN1P49257 510 aa12.89□□□□□ -0.35
CLN3-244ENST00000636147 GABPB1Q06547 395 aaPredicted RBP12.89□□□□□ -0.35
CLN3-244ENST00000636147 TRIM29Q14134 588 aa12.89□□□□□ -0.35
CLN3-244ENST00000636147 KRT32Q14532 448 aa12.89□□□□□ -0.35
CLN3-244ENST00000636147 CCDC34Q96HJ3 373 aa12.89□□□□□ -0.35
CLN3-244ENST00000636147 MRVI1Q9Y6F6 885 aa12.89□□□□□ -0.35
CLN3-244ENST00000636147 IFNKQ9P0W0 207 aa12.88□□□□□ -0.35
CLN3-244ENST00000636147 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.88□□□□□ -0.35
CLN3-244ENST00000636147 CTAGE5O15320 804 aa12.88□□□□□ -0.35
CLN3-244ENST00000636147 GSDMDP57764 484 aa12.88□□□□□ -0.35
CLN3-244ENST00000636147 NFXL1Q6ZNB6 911 aa12.88□□□□□ -0.35
CLN3-244ENST00000636147 CHST3Q7LGC8 479 aa12.88□□□□□ -0.35
CLN3-244ENST00000636147 TRIM34Q9BYJ4 488 aa12.88□□□□□ -0.35
CLN3-244ENST00000636147 USP44Q9H0E7 712 aa12.88□□□□□ -0.35
CLN3-244ENST00000636147 OSBPL3Q9H4L5 887 aa12.88□□□□□ -0.35
CLN3-244ENST00000636147 SLC3A2P08195 630 aaKnown RBP12.88□□□□□ -0.35
CLN3-244ENST00000636147 FAM69CQ0P6D2 419 aa12.88□□□□□ -0.35
CLN3-244ENST00000636147 MPRIPQ6WCQ1 1025 aa12.88□□□□□ -0.35
CLN3-244ENST00000636147 Q6ZUG5 572 aa12.88□□□□□ -0.35
CLN3-244ENST00000636147 ACEP12821 1306 aa12.88□□□□□ -0.35
CLN3-244ENST00000636147 GNG11P61952 73 aa12.87□□□□□ -0.35
CLN3-244ENST00000636147 TRDNQ13061 729 aa12.87□□□□□ -0.35
CLN3-244ENST00000636147 KCNF1Q9H3M0 494 aa12.87□□□□□ -0.35
CLN3-244ENST00000636147 TPCN1Q9ULQ1 816 aa12.87□□□□□ -0.35
CLN3-244ENST00000636147 MAP3K2Q9Y2U5 619 aa12.87□□□□□ -0.35
CLN3-244ENST00000636147 CCP110O43303 1012 aa12.87□□□□□ -0.35
CLN3-244ENST00000636147 CCDC102AQ96A19 550 aa12.87□□□□□ -0.35
CLN3-244ENST00000636147 ERO1AQ96HE7 468 aa12.87□□□□□ -0.35
CLN3-244ENST00000636147 CLSTN2Q9H4D0 955 aa12.87□□□□□ -0.35
CLN3-244ENST00000636147 HYPKQ9NX55 129 aa12.87□□□□□ -0.35
CLN3-244ENST00000636147 ZFYVE9O95405 1425 aa12.87□□□□□ -0.35
CLN3-244ENST00000636147 CROCC2H7BZ55 1655 aa12.87□□□□□ -0.35
CLN3-244ENST00000636147 EID1Q9Y6B2 187 aa12.87□□□□□ -0.35
CLN3-244ENST00000636147 NDUFB9Q9Y6M9 179 aa12.87□□□□□ -0.35
CLN3-244ENST00000636147 A0A1B0GVL5 298 aa12.86□□□□□ -0.35
CLN3-244ENST00000636147 TOP1P11387 765 aaKnown RBP12.86□□□□□ -0.35
CLN3-244ENST00000636147 CWF19L2Q2TBE0 894 aaKnown RBP12.86□□□□□ -0.35
CLN3-244ENST00000636147 DDX46Q7L014 1031 aaKnown RBP12.86□□□□□ -0.35
CLN3-244ENST00000636147 ABCA8O94911 1581 aa12.86□□□□□ -0.35
CLN3-244ENST00000636147 PTCH1Q13635 1447 aa12.86□□□□□ -0.35
CLN3-244ENST00000636147 TRPM2O94759 1503 aa12.86□□□□□ -0.35
CLN3-244ENST00000636147 CAVIN2O95810 425 aa12.86□□□□□ -0.35
CLN3-244ENST00000636147 TPM1P09493 284 aa12.86□□□□□ -0.35
CLN3-244ENST00000636147 RASSF8Q8NHQ8 419 aa12.86□□□□□ -0.35
CLN3-244ENST00000636147 CPLX3Q8WVH0 158 aa12.86□□□□□ -0.35
CLN3-244ENST00000636147 YTHDC2Q9H6S0 1430 aaKnown RBP12.85□□□□□ -0.35
CLN3-244ENST00000636147 FKBP4Q02790 459 aaKnown RBP eCLIP12.85□□□□□ -0.35
CLN3-244ENST00000636147 CHMP4CQ96CF2 233 aa12.85□□□□□ -0.35
CLN3-244ENST00000636147 SPTLC3Q9NUV7 552 aa12.85□□□□□ -0.35
CLN3-244ENST00000636147 MCM6Q14566 821 aa12.85□□□□□ -0.35
CLN3-244ENST00000636147 NOM1Q5C9Z4 860 aaKnown RBP12.85□□□□□ -0.35
CLN3-244ENST00000636147 C10orf67Q8IYJ2 551 aa12.85□□□□□ -0.35
CLN3-244ENST00000636147 KLHDC4Q8TBB5 520 aa12.85□□□□□ -0.35
CLN3-244ENST00000636147 EDC3Q96F86 508 aaKnown RBP12.85□□□□□ -0.35
CLN3-244ENST00000636147 TTC21BQ7Z4L5 1316 aa12.85□□□□□ -0.35
CLN3-244ENST00000636147 MADDQ8WXG6 1647 aa12.85□□□□□ -0.35
CLN3-244ENST00000636147 PIK3R4Q99570 1358 aa12.85□□□□□ -0.35
CLN3-244ENST00000636147 TULP1O00294 542 aaPredicted RBP12.85□□□□□ -0.35
CLN3-244ENST00000636147 HAND2P61296 217 aa12.85□□□□□ -0.35
CLN3-244ENST00000636147 C8orf76Q96K31 380 aa12.85□□□□□ -0.35
CLN3-244ENST00000636147 EYA1Q99502 592 aa12.85□□□□□ -0.35
CLN3-244ENST00000636147 SLC27A2O14975 620 aa12.84□□□□□ -0.35
CLN3-244ENST00000636147 LSG1Q9H089 658 aaKnown RBP12.84□□□□□ -0.35
CLN3-244ENST00000636147 IL25Q9H293 177 aa12.84□□□□□ -0.35
CLN3-244ENST00000636147 ABCC1P33527 1531 aa12.84□□□□□ -0.35
CLN3-244ENST00000636147 ZSCAN16Q9H4T2 348 aaPredicted RBP12.84□□□□□ -0.35
CLN3-244ENST00000636147 PLXNC1O60486 1568 aa12.84□□□□□ -0.35
CLN3-244ENST00000636147 MARCKSP29966 332 aaPredicted RBP12.84□□□□□ -0.35
CLN3-244ENST00000636147 CASQ1P31415 396 aa12.84□□□□□ -0.35
CLN3-244ENST00000636147 CCDC129Q6ZRS4 1044 aa12.84□□□□□ -0.35
CLN3-244ENST00000636147 LRRC8AQ8IWT6 810 aa12.84□□□□□ -0.35
CLN3-244ENST00000636147 IQSEC2Q5JU85 1478 aa12.84□□□□□ -0.35
CLN3-244ENST00000636147 NPATQ14207 1427 aa12.83□□□□□ -0.36
CLN3-244ENST00000636147 APOBRQ0VD83 1088 aa12.83□□□□□ -0.36
CLN3-244ENST00000636147 NCOA5Q9HCD5 579 aaKnown RBP12.83□□□□□ -0.36
CLN3-244ENST00000636147 UBASH3AP57075 661 aa12.83□□□□□ -0.36
CLN3-244ENST00000636147 OTUD7BQ6GQQ9 843 aa12.83□□□□□ -0.36
CLN3-244ENST00000636147 KLHL10Q6JEL2 608 aa12.83□□□□□ -0.36
CLN3-244ENST00000636147 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.83□□□□□ -0.36
CLN3-244ENST00000636147 TTC5Q8N0Z6 440 aa12.83□□□□□ -0.36
CLN3-244ENST00000636147 CCDC85AQ96PX6 553 aaPredicted RBP12.83□□□□□ -0.36
CLN3-244ENST00000636147 UTP14AQ9BVJ6 771 aaKnown RBP12.83□□□□□ -0.36
CLN3-244ENST00000636147 KIF24Q5T7B8 1368 aa12.83□□□□□ -0.36
CLN3-244ENST00000636147 MAP3K19Q56UN5 1328 aa12.83□□□□□ -0.36
CLN3-244ENST00000636147 FAM193AP78312 1265 aa12.83□□□□□ -0.36
CLN3-244ENST00000636147 NEK11Q8NG66 645 aa12.83□□□□□ -0.36
CLN3-244ENST00000636147 CARD6Q9BX69 1037 aa12.83□□□□□ -0.36
CLN3-244ENST00000636147 RNF216Q9NWF9 866 aaPredicted RBP12.83□□□□□ -0.36
CLN3-244ENST00000636147 HOOK1Q9UJC3 728 aaKnown RBP12.83□□□□□ -0.36
CLN3-244ENST00000636147 CBFA2T2O43439 604 aa12.82□□□□□ -0.36
CLN3-244ENST00000636147 MRPS27Q92552 414 aaKnown RBP12.82□□□□□ -0.36
CLN3-244ENST00000636147 FTOQ9C0B1 505 aaKnown RBP eCLIP12.82□□□□□ -0.36
CLN3-244ENST00000636147 CLTCL1P53675 1640 aa12.82□□□□□ -0.36
CLN3-244ENST00000636147 IQGAP3Q86VI3 1631 aa12.82□□□□□ -0.36
CLN3-244ENST00000636147 ZSCAN12O43309 604 aa12.82□□□□□ -0.36
CLN3-244ENST00000636147 PHACTR2O75167 634 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms