RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 PNISRQ8TF01 805 aaKnown RBP17.49■□□□□ 0.39
PDLIM2-220ENST00000622226 RAB3IL1Q8TBN0 382 aa17.49■□□□□ 0.39
PDLIM2-220ENST00000622226 RANBP6O60518 1105 aaKnown RBP17.49■□□□□ 0.39
PDLIM2-220ENST00000622226 RABEP2Q9H5N1 569 aa17.49■□□□□ 0.39
PDLIM2-220ENST00000622226 KRT13P13646 458 aa17.49■□□□□ 0.39
PDLIM2-220ENST00000622226 SSRP1Q08945 709 aaKnown RBP17.49■□□□□ 0.39
PDLIM2-220ENST00000622226 SLU7O95391 586 aaKnown RBP17.48■□□□□ 0.39
PDLIM2-220ENST00000622226 RFC1P35251 1148 aaPredicted RBP17.48■□□□□ 0.39
PDLIM2-220ENST00000622226 FEZ1Q99689 392 aa17.48■□□□□ 0.39
PDLIM2-220ENST00000622226 MPRIPQ6WCQ1 1025 aa17.48■□□□□ 0.39
PDLIM2-220ENST00000622226 NBPF11Q86T75 865 aa17.48■□□□□ 0.39
PDLIM2-220ENST00000622226 TLDC2A0PJX2 215 aa17.48■□□□□ 0.39
PDLIM2-220ENST00000622226 WDR63Q8IWG1 891 aa17.48■□□□□ 0.39
PDLIM2-220ENST00000622226 PPP1R12CQ9BZL4 782 aa17.48■□□□□ 0.39
PDLIM2-220ENST00000622226 FAM114A2Q9NRY5 505 aa17.48■□□□□ 0.39
PDLIM2-220ENST00000622226 CWC25Q9NXE8 425 aaPredicted RBP17.48■□□□□ 0.39
PDLIM2-220ENST00000622226 SLC12A7Q9Y666 1083 aa17.48■□□□□ 0.39
PDLIM2-220ENST00000622226 KARSQ15046 597 aaKnown RBP17.48■□□□□ 0.39
PDLIM2-220ENST00000622226 RRBP1Q9P2E9 1410 aaKnown RBP17.47■□□□□ 0.39
PDLIM2-220ENST00000622226 UVSSAQ2YD98 709 aa17.47■□□□□ 0.39
PDLIM2-220ENST00000622226 RPAP2Q8IXW5 612 aaPredicted RBP17.47■□□□□ 0.39
PDLIM2-220ENST00000622226 USHBP1Q8N6Y0 703 aa17.47■□□□□ 0.39
PDLIM2-220ENST00000622226 PRG4Q92954 1404 aaPredicted RBP17.47■□□□□ 0.39
PDLIM2-220ENST00000622226 CCDC8Q9H0W5 538 aaPredicted RBP17.47■□□□□ 0.39
PDLIM2-220ENST00000622226 MKNK2Q9HBH9 465 aa17.47■□□□□ 0.39
PDLIM2-220ENST00000622226 KIF3CO14782 793 aa17.47■□□□□ 0.39
PDLIM2-220ENST00000622226 ACTN2P35609 894 aa17.47■□□□□ 0.39
PDLIM2-220ENST00000622226 IFT81Q8WYA0 676 aa17.47■□□□□ 0.39
PDLIM2-220ENST00000622226 UBE2HP62256 183 aa17.47■□□□□ 0.39
PDLIM2-220ENST00000622226 SLC12A5Q9H2X9 1139 aa17.47■□□□□ 0.39
PDLIM2-220ENST00000622226 GOLGA8AA7E2F4 631 aa17.47■□□□□ 0.39
PDLIM2-220ENST00000622226 U2AF2P26368 475 aaKnown RBP eCLIP17.47■□□□□ 0.39
PDLIM2-220ENST00000622226 GJC1P36383 396 aa17.47■□□□□ 0.39
PDLIM2-220ENST00000622226 TMEM266Q2M3C6 531 aa17.47■□□□□ 0.39
PDLIM2-220ENST00000622226 PDE1CQ14123 709 aaPredicted RBP17.46■□□□□ 0.39
PDLIM2-220ENST00000622226 CCDC129Q6ZRS4 1044 aa17.46■□□□□ 0.39
PDLIM2-220ENST00000622226 GOLGA1Q92805 767 aa17.46■□□□□ 0.39
PDLIM2-220ENST00000622226 TRIM47Q96LD4 638 aa17.46■□□□□ 0.39
PDLIM2-220ENST00000622226 NAPBQ9H115 298 aa17.46■□□□□ 0.39
PDLIM2-220ENST00000622226 TNIP1Q15025 636 aa17.46■□□□□ 0.39
PDLIM2-220ENST00000622226 SEPT14Q6ZU15 432 aa17.46■□□□□ 0.39
PDLIM2-220ENST00000622226 ANAPC4Q9UJX5 808 aa17.46■□□□□ 0.39
PDLIM2-220ENST00000622226 CCDC194A0A1B0GVG4 234 aa17.46■□□□□ 0.39
PDLIM2-220ENST00000622226 KLHL40Q2TBA0 621 aa17.46■□□□□ 0.39
PDLIM2-220ENST00000622226 FAM114A1Q8IWE2 563 aa17.46■□□□□ 0.39
PDLIM2-220ENST00000622226 ZPR1O75312 459 aa17.46■□□□□ 0.39
PDLIM2-220ENST00000622226 KCNK9Q9NPC2 374 aa17.46■□□□□ 0.39
PDLIM2-220ENST00000622226 FEZ2Q9UHY8 353 aaPredicted RBP17.46■□□□□ 0.39
PDLIM2-220ENST00000622226 TMEM110-MUSTN1A8MSY1 372 aa17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 ZFYP08048 801 aaPredicted RBP17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 AFMP43652 599 aa17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 RRS1Q15050 365 aaKnown RBP17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 GLRX3O76003 335 aaKnown RBP17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 SLC4A8Q2Y0W8 1093 aa17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 ZNF530Q6P9A1 599 aaPredicted RBP17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 KIF1BPQ96EK5 621 aa17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 ERCC3P19447 782 aa17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 CLNS1AP54105 237 aaKnown RBP17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 CFAP70Q5T0N1 1121 aa17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 EHBP1Q8NDI1 1231 aa17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 CTCFLQ8NI51 663 aaPredicted RBP17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 THUMPD2Q9BTF0 503 aaKnown RBP17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 PHAXQ9H814 394 aaKnown RBP17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 A0A1B0GUL7 405 aa17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 HGSO14964 777 aaPredicted RBP17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 CNPY2Q9Y2B0 182 aa17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 MAP7D1Q3KQU3 841 aa17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 METTL24Q5JXM2 366 aa17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 ZNF622Q969S3 477 aaKnown RBP eCLIP17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 CDK19Q9BWU1 502 aa17.45■□□□□ 0.38
PDLIM2-220ENST00000622226 ARID5AQ03989 594 aa17.44■□□□□ 0.38
PDLIM2-220ENST00000622226 PPP4R3AQ6IN85 833 aa17.44■□□□□ 0.38
PDLIM2-220ENST00000622226 STIM2Q9P246 746 aa17.44■□□□□ 0.38
PDLIM2-220ENST00000622226 NESP48681 1621 aa17.44■□□□□ 0.38
PDLIM2-220ENST00000622226 AOPEPQ8N6M6 819 aa17.44■□□□□ 0.38
PDLIM2-220ENST00000622226 CTAGE9A4FU28 777 aa17.44■□□□□ 0.38
PDLIM2-220ENST00000622226 IFIT3O14879 490 aaKnown RBP17.44■□□□□ 0.38
PDLIM2-220ENST00000622226 PCK1P35558 622 aa17.44■□□□□ 0.38
PDLIM2-220ENST00000622226 CETN1Q12798 172 aa17.44■□□□□ 0.38
PDLIM2-220ENST00000622226 ACSBG1Q96GR2 724 aa17.44■□□□□ 0.38
PDLIM2-220ENST00000622226 RAB34Q9BZG1 259 aa17.44■□□□□ 0.38
PDLIM2-220ENST00000622226 PLEKHH1Q9ULM0 1364 aa17.44■□□□□ 0.38
PDLIM2-220ENST00000622226 SYT1P21579 422 aa17.44■□□□□ 0.38
PDLIM2-220ENST00000622226 CCDC25Q86WR0 208 aa17.44■□□□□ 0.38
PDLIM2-220ENST00000622226 CEP120Q8N960 986 aa17.44■□□□□ 0.38
PDLIM2-220ENST00000622226 SEC62Q99442 399 aaKnown RBP17.44■□□□□ 0.38
PDLIM2-220ENST00000622226 DNAJC25Q9H1X3 360 aa17.44■□□□□ 0.38
PDLIM2-220ENST00000622226 SYT10Q6XYQ8 523 aa17.43■□□□□ 0.38
PDLIM2-220ENST00000622226 SYCP3Q8IZU3 236 aa17.43■□□□□ 0.38
PDLIM2-220ENST00000622226 LZTFL1Q9NQ48 299 aa17.43■□□□□ 0.38
PDLIM2-220ENST00000622226 ZKSCAN5Q9Y2L8 839 aa17.43■□□□□ 0.38
PDLIM2-220ENST00000622226 ZNF213O14771 459 aa17.43■□□□□ 0.38
PDLIM2-220ENST00000622226 TSHZ3Q63HK5 1081 aa17.43■□□□□ 0.38
PDLIM2-220ENST00000622226 CCDC196A0A1B0GTZ2 297 aa17.43■□□□□ 0.38
PDLIM2-220ENST00000622226 BTBD11A6QL63 1104 aa17.43■□□□□ 0.38
PDLIM2-220ENST00000622226 IFIT1P09914 478 aaKnown RBP17.43■□□□□ 0.38
PDLIM2-220ENST00000622226 CCDC102BQ68D86 513 aa17.43■□□□□ 0.38
PDLIM2-220ENST00000622226 PABPN1LA6NDY0 278 aaKnown RBP17.42■□□□□ 0.38
PDLIM2-220ENST00000622226 SF3A3Q12874 501 aaKnown RBP eCLIP17.42■□□□□ 0.38
PDLIM2-220ENST00000622226 SREK1Q8WXA9 508 aaKnown RBP17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms