RNA–Protein interactions for RNA: ENST00000615442.1

PVT1-223, Transcript of Pvt1 oncogene, human

Gene PVT1, Length 165 nt, Biotype misc RNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-223	ENST00000615442	TRMT112	Q9UI30	125 aa	Known RBP	13.32	□□□□□ -0.28
PVT1-223	ENST00000615442	CACNA1F	O60840	1977 aa		13.31	□□□□□ -0.28
PVT1-223	ENST00000615442	FAM177B	A6PVY3	158 aa		13.31	□□□□□ -0.28
PVT1-223	ENST00000615442	CCT4	P50991	539 aa	Known RBP	13.31	□□□□□ -0.28
PVT1-223	ENST00000615442	GCKR	Q14397	625 aa		13.31	□□□□□ -0.28
PVT1-223	ENST00000615442	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.31	□□□□□ -0.28
PVT1-223	ENST00000615442	BRIP1	Q9BX63	1249 aa		13.31	□□□□□ -0.28
PVT1-223	ENST00000615442	SH3TC1	Q8TE82	1336 aa		13.31	□□□□□ -0.28
PVT1-223	ENST00000615442	PCCA	P05165	728 aa	Predicted RBP	13.3	□□□□□ -0.28
PVT1-223	ENST00000615442	MS4A1	P11836	297 aa		13.3	□□□□□ -0.28
PVT1-223	ENST00000615442	TRIM27	P14373	513 aa		13.3	□□□□□ -0.28
PVT1-223	ENST00000615442	HSP90B1	P14625	803 aa	Known RBP	13.3	□□□□□ -0.28
PVT1-223	ENST00000615442	TGFB2	P61812	414 aa		13.3	□□□□□ -0.28
PVT1-223	ENST00000615442	CWF19L2	Q2TBE0	894 aa	Known RBP	13.3	□□□□□ -0.28
PVT1-223	ENST00000615442	ERFE	Q4G0M1	354 aa		13.3	□□□□□ -0.28
PVT1-223	ENST00000615442	PDZRN3	Q9UPQ7	1066 aa		13.3	□□□□□ -0.28
PVT1-223	ENST00000615442	LRP5	O75197	1615 aa		13.3	□□□□□ -0.28
PVT1-223	ENST00000615442		H7C1W4	665 aa		13.29	□□□□□ -0.28
PVT1-223	ENST00000615442	PDE6B	P35913	854 aa		13.29	□□□□□ -0.28
PVT1-223	ENST00000615442	INTS3	Q68E01	1043 aa	Known RBP	13.29	□□□□□ -0.28
PVT1-223	ENST00000615442	NUTM1	Q86Y26	1132 aa		13.29	□□□□□ -0.28
PVT1-223	ENST00000615442	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.29	□□□□□ -0.28
PVT1-223	ENST00000615442	FAM89A	Q96GI7	184 aa		13.29	□□□□□ -0.28
PVT1-223	ENST00000615442	FHDC1	Q9C0D6	1143 aa	Predicted RBP	13.29	□□□□□ -0.28
PVT1-223	ENST00000615442	ABCC4	O15439	1325 aa		13.29	□□□□□ -0.28
PVT1-223	ENST00000615442	NUP98	P52948	1817 aa		13.29	□□□□□ -0.28
PVT1-223	ENST00000615442	C10orf71	Q711Q0	1435 aa		13.29	□□□□□ -0.28
PVT1-223	ENST00000615442	PXDNL	A1KZ92	1463 aa		13.29	□□□□□ -0.28
PVT1-223	ENST00000615442	ARFGEF2	Q9Y6D5	1785 aa		13.28	□□□□□ -0.28
PVT1-223	ENST00000615442	KLRG2	A4D1S0	409 aa	Predicted RBP	13.28	□□□□□ -0.28
PVT1-223	ENST00000615442	SYT17	Q9BSW7	474 aa		13.28	□□□□□ -0.28
PVT1-223	ENST00000615442	CDHR2	Q9BYE9	1310 aa		13.28	□□□□□ -0.28
PVT1-223	ENST00000615442	NRXN2	Q9P2S2	1712 aa		13.27	□□□□□ -0.28
PVT1-223	ENST00000615442	DZIP1L	Q8IYY4	767 aa	Known RBP	13.27	□□□□□ -0.29
PVT1-223	ENST00000615442	KLHL34	Q8N239	644 aa		13.27	□□□□□ -0.29
PVT1-223	ENST00000615442	CCDC24	Q8N4L8	307 aa		13.27	□□□□□ -0.29
PVT1-223	ENST00000615442	NLRP3	Q96P20	1036 aa		13.27	□□□□□ -0.29
PVT1-223	ENST00000615442	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.27	□□□□□ -0.29
PVT1-223	ENST00000615442	RIC1	Q4ADV7	1423 aa		13.27	□□□□□ -0.29
PVT1-223	ENST00000615442		H0YIN7	160 aa		13.26	□□□□□ -0.29
PVT1-223	ENST00000615442	GRM8	O00222	908 aa		13.26	□□□□□ -0.29
PVT1-223	ENST00000615442	UTY	O14607	1347 aa		13.26	□□□□□ -0.29
PVT1-223	ENST00000615442	IRS4	O14654	1257 aa	Predicted RBP	13.26	□□□□□ -0.29
PVT1-223	ENST00000615442	CASP7	P55210	303 aa		13.26	□□□□□ -0.29
PVT1-223	ENST00000615442	FTSJ3	Q8IY81	847 aa	Known RBP	13.26	□□□□□ -0.29
PVT1-223	ENST00000615442	SYNE4	Q8N205	404 aa		13.26	□□□□□ -0.29
PVT1-223	ENST00000615442	CLUAP1	Q96AJ1	413 aa		13.26	□□□□□ -0.29
PVT1-223	ENST00000615442	ANKRD36C	Q5JPF3	1778 aa		13.25	□□□□□ -0.29
PVT1-223	ENST00000615442	ABCC12	Q96J65	1359 aa		13.25	□□□□□ -0.29
PVT1-223	ENST00000615442	PDE8A	O60658	829 aa		13.25	□□□□□ -0.29
PVT1-223	ENST00000615442	HCLS1	P14317	486 aa	Predicted RBP	13.25	□□□□□ -0.29
PVT1-223	ENST00000615442	PDE3A	Q14432	1141 aa		13.25	□□□□□ -0.29
PVT1-223	ENST00000615442	CRY2	Q49AN0	593 aa		13.25	□□□□□ -0.29
PVT1-223	ENST00000615442	RTL5	Q5HYW3	569 aa	Predicted RBP	13.25	□□□□□ -0.29
PVT1-223	ENST00000615442	UBE3B	Q7Z3V4	1068 aa		13.25	□□□□□ -0.29
PVT1-223	ENST00000615442	C2CD5	Q86YS7	1000 aa		13.25	□□□□□ -0.29
PVT1-223	ENST00000615442	USP44	Q9H0E7	712 aa		13.25	□□□□□ -0.29
PVT1-223	ENST00000615442	TNN	Q9UQP3	1299 aa		13.25	□□□□□ -0.29
PVT1-223	ENST00000615442		A0A0G2JLW4	131 aa		13.24	□□□□□ -0.29
PVT1-223	ENST00000615442	PLIN1	O60240	522 aa		13.24	□□□□□ -0.29
PVT1-223	ENST00000615442	SRGN	P10124	158 aa		13.24	□□□□□ -0.29
PVT1-223	ENST00000615442	DPEP1	P16444	411 aa		13.24	□□□□□ -0.29
PVT1-223	ENST00000615442	SF3B3	Q15393	1217 aa	Known RBP	13.24	□□□□□ -0.29
PVT1-223	ENST00000615442	TMEM57	Q8N5G2	664 aa		13.24	□□□□□ -0.29
PVT1-223	ENST00000615442	JARID2	Q92833	1246 aa	Predicted RBP	13.24	□□□□□ -0.29
PVT1-223	ENST00000615442	PLA2G12B	Q9BX93	195 aa		13.24	□□□□□ -0.29
PVT1-223	ENST00000615442	HDAC5	Q9UQL6	1122 aa		13.24	□□□□□ -0.29
PVT1-223	ENST00000615442	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.23	□□□□□ -0.29
PVT1-223	ENST00000615442	NPR1	P16066	1061 aa		13.23	□□□□□ -0.29
PVT1-223	ENST00000615442	KCNA3	P22001	575 aa		13.23	□□□□□ -0.29
PVT1-223	ENST00000615442	STYK1	Q6J9G0	422 aa		13.23	□□□□□ -0.29
PVT1-223	ENST00000615442	NLGN2	Q8NFZ4	835 aa		13.23	□□□□□ -0.29
PVT1-223	ENST00000615442	MASTL	Q96GX5	879 aa		13.23	□□□□□ -0.29
PVT1-223	ENST00000615442	RLBP1	P12271	317 aa		13.22	□□□□□ -0.29
PVT1-223	ENST00000615442	CHRNA5	P30532	468 aa		13.22	□□□□□ -0.29
PVT1-223	ENST00000615442	HOXA10	P31260	410 aa	Predicted RBP	13.22	□□□□□ -0.29
PVT1-223	ENST00000615442	RRP1	P56182	461 aa	Known RBP	13.22	□□□□□ -0.29
PVT1-223	ENST00000615442	C3orf67	Q6ZVT6	689 aa		13.22	□□□□□ -0.29
PVT1-223	ENST00000615442	PANK1	Q8TE04	598 aa		13.22	□□□□□ -0.29
PVT1-223	ENST00000615442	PIM2	Q9P1W9	311 aa		13.22	□□□□□ -0.29
PVT1-223	ENST00000615442	AFDN	P55196	1824 aa	Known RBP	13.22	□□□□□ -0.29
PVT1-223	ENST00000615442	CSF1R	P07333	972 aa		13.21	□□□□□ -0.29
PVT1-223	ENST00000615442	GNAI3	P08754	354 aa		13.21	□□□□□ -0.29
PVT1-223	ENST00000615442	ALDH1B1	P30837	517 aa		13.21	□□□□□ -0.29
PVT1-223	ENST00000615442	RPGR	Q92834	1020 aa	Known RBP	13.21	□□□□□ -0.29
PVT1-223	ENST00000615442	CNKSR1	Q969H4	720 aa		13.21	□□□□□ -0.29
PVT1-223	ENST00000615442	RBM17	Q96I25	401 aa	Known RBP	13.21	□□□□□ -0.29
PVT1-223	ENST00000615442	CRAMP1	Q96RY5	1269 aa		13.21	□□□□□ -0.29
PVT1-223	ENST00000615442	KIF13B	Q9NQT8	1826 aa		13.2	□□□□□ -0.3
PVT1-223	ENST00000615442	ZBTB7B	O15156	539 aa	Predicted RBP	13.2	□□□□□ -0.3
PVT1-223	ENST00000615442	UBTFL1	P0CB47	393 aa	Predicted RBP	13.2	□□□□□ -0.3
PVT1-223	ENST00000615442	CTSW	P56202	376 aa		13.2	□□□□□ -0.3
PVT1-223	ENST00000615442	FOXO4	P98177	505 aa		13.2	□□□□□ -0.3
PVT1-223	ENST00000615442	MVP	Q14764	893 aa	Known RBP	13.2	□□□□□ -0.3
PVT1-223	ENST00000615442	CCDC152	Q4G0S7	254 aa		13.2	□□□□□ -0.3
PVT1-223	ENST00000615442	DDX46	Q7L014	1031 aa	Known RBP	13.2	□□□□□ -0.3
PVT1-223	ENST00000615442	ITPRIP	Q8IWB1	547 aa		13.2	□□□□□ -0.3
PVT1-223	ENST00000615442	TTLL11	Q8NHH1	800 aa		13.2	□□□□□ -0.3
PVT1-223	ENST00000615442	ZNF622	Q969S3	477 aa	Known RBP eCLIP	13.2	□□□□□ -0.3
PVT1-223	ENST00000615442	CHMP4B	Q9H444	224 aa	Known RBP	13.2	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 18 ms