RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 ARMC9Q7Z3E5 817 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 DNAI1Q9UI46 699 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 PTGS1P23219 599 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 TADA2BQ86TJ2 420 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 FAM71BQ8TC56 605 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 RTEL1-TNFRSF6BF6WH68 1400 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 CAMSAP2Q08AD1 1489 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 GOLGA6CA6NDK9 693 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 GOLGA6DP0CG33 693 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 CCDC174Q6PII3 467 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 NEK11Q8NG66 645 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 GOLGA6AQ9NYA3 693 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 SYNJ2O15056 1496 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 PEX19P40855 299 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 TRIM29Q14134 588 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 RILPL2Q969X0 211 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 ADAMTS12P58397 1594 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 GCOM1H8Y6P7 765 aaPredicted RBP5.67□□□□□ -1.5
VPS13D-213ENST00000613099 MYZAPP0CAP1 466 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 ABCA5Q8WWZ7 1642 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 EIF3CLB5ME19 914 aaKnown RBP5.67□□□□□ -1.5
VPS13D-213ENST00000613099 EIF3CQ99613 913 aaKnown RBP5.67□□□□□ -1.5
VPS13D-213ENST00000613099 GCFC2P16383 781 aaKnown RBP5.67□□□□□ -1.5
VPS13D-213ENST00000613099 ATP2B3Q16720 1220 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 CCDC170Q8IYT3 715 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 TSC22D3Q99576 134 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 PANK3Q9H999 370 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 USH1CQ9Y6N9 552 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 EFCAB2Q5VUJ9 269 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 KLHL23Q8NBE8 558 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 BATF3Q9NR55 127 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 AIMP1Q12904 312 aaKnown RBP5.67□□□□□ -1.5
VPS13D-213ENST00000613099 NAA16Q6N069 864 aaPredicted RBP5.67□□□□□ -1.5
VPS13D-213ENST00000613099 OSCARQ8IYS5 282 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 MPHOSPH8Q99549 860 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 THEGQ9P2T0 379 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 SF3B2Q13435 895 aaKnown RBP5.66□□□□□ -1.5
VPS13D-213ENST00000613099 CHD1LQ86WJ1 897 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 TAF4BQ92750 862 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 RBM27Q9P2N5 1060 aaKnown RBP5.66□□□□□ -1.5
VPS13D-213ENST00000613099 DAAM1Q9Y4D1 1078 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 URB2Q14146 1524 aaKnown RBP5.66□□□□□ -1.5
VPS13D-213ENST00000613099 HCLS1P14317 486 aaPredicted RBP5.66□□□□□ -1.5
VPS13D-213ENST00000613099 CRYMQ14894 314 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 TSC1Q92574 1164 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 CASKIN1Q8WXD9 1431 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 APAF1O14727 1248 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 HSP90AA5PQ58FG0 334 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 PPFIA4O75335 1185 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 CHMP4BP1P59074 171 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 CPLX4Q7Z7G2 160 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 CACNA2D3Q8IZS8 1091 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 TRIM7Q9C029 511 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 PAFAH1B1P43034 410 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 CPLX1O14810 134 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 TRIM21P19474 475 aaKnown RBP5.66□□□□□ -1.5
VPS13D-213ENST00000613099 SKAP1Q86WV1 359 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 PPFIBP2Q8ND30 876 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 ZMYM3Q14202 1370 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 KIAA0586Q9BVV6 1533 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.66□□□□□ -1.5
VPS13D-213ENST00000613099 RNF216Q9NWF9 866 aaPredicted RBP5.66□□□□□ -1.5
VPS13D-213ENST00000613099 CYP46A1Q9Y6A2 500 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 SAFBQ15424 915 aaKnown RBP eCLIP5.66□□□□□ -1.5
VPS13D-213ENST00000613099 KANK4Q5T7N3 995 aaPredicted RBP5.66□□□□□ -1.5
VPS13D-213ENST00000613099 CDCA7LQ96GN5 454 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 UBA5Q9GZZ9 404 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 PDRG1Q9NUG6 133 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 MAGEC2Q9UBF1 373 aaPredicted RBP5.66□□□□□ -1.5
VPS13D-213ENST00000613099 CFAP100Q494V2 611 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 ATAD2Q6PL18 1390 aa5.66□□□□□ -1.5
VPS13D-213ENST00000613099 EFCAB8A8MWE9 144 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 ZEB2O60315 1214 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 TROVE2P10155 538 aaKnown RBP eCLIP5.65□□□□□ -1.5
VPS13D-213ENST00000613099 MAP3K9P80192 1104 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 SART3Q15020 963 aaKnown RBP5.65□□□□□ -1.5
VPS13D-213ENST00000613099 HSP90AB4PQ58FF6 505 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 MUM1L1Q5H9M0 696 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 CWC25Q9NXE8 425 aaPredicted RBP5.65□□□□□ -1.5
VPS13D-213ENST00000613099 CYP2C19P33261 490 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 EVCP57679 992 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 RNF10Q8N5U6 811 aaKnown RBP5.65□□□□□ -1.5
VPS13D-213ENST00000613099 RANBP1P43487 201 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 IQCA1Q86XH1 822 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 SAMD15Q9P1V8 674 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 TPX2Q9ULW0 747 aaKnown RBP5.65□□□□□ -1.5
VPS13D-213ENST00000613099 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.65□□□□□ -1.56e-7■■□□□ 12.6
VPS13D-213ENST00000613099 ALDH3A1P30838 453 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 CAPRIN2Q6IMN6 1127 aaKnown RBP5.65□□□□□ -1.5
VPS13D-213ENST00000613099 NFXL1Q6ZNB6 911 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 RABGGTAQ92696 567 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.65□□□□□ -1.5
VPS13D-213ENST00000613099 IBTKQ9P2D0 1353 aaPredicted RBP5.65□□□□□ -1.5
VPS13D-213ENST00000613099 CETN3O15182 167 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 TMED1Q13445 227 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 RAB11FIP4Q86YS3 637 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 HIP1RO75146 1068 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 SETDB1Q15047 1291 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 SPA17Q15506 151 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 SDCCAG8Q86SQ7 713 aaPredicted RBP5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms