RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 RPGRQ92834 1020 aaKnown RBP20.67■□□□□ 0.9
SHKBP1-228ENST00000602239 TAF1DQ9H5J8 278 aaPredicted RBP20.67■□□□□ 0.9
SHKBP1-228ENST00000602239 BABAM1Q9NWV8 329 aa20.67■□□□□ 0.9
SHKBP1-228ENST00000602239 SNED1Q8TER0 1413 aa20.67■□□□□ 0.9
SHKBP1-228ENST00000602239 FZD9O00144 591 aa20.66■□□□□ 0.9
SHKBP1-228ENST00000602239 TCERG1O14776 1098 aaKnown RBP20.66■□□□□ 0.9
SHKBP1-228ENST00000602239 MYBBP1AQ9BQG0 1328 aaKnown RBP20.66■□□□□ 0.9
SHKBP1-228ENST00000602239 IBTKQ9P2D0 1353 aaPredicted RBP20.65■□□□□ 0.9
SHKBP1-228ENST00000602239 IQCA1LA6NCM1 817 aa20.65■□□□□ 0.9
SHKBP1-228ENST00000602239 COPS6Q7L5N1 327 aa20.65■□□□□ 0.9
SHKBP1-228ENST00000602239 PSMD1Q99460 953 aa20.65■□□□□ 0.9
SHKBP1-228ENST00000602239 TRIM35Q9UPQ4 493 aa20.65■□□□□ 0.9
SHKBP1-228ENST00000602239 LMOD3Q0VAK6 560 aa20.64■□□□□ 0.89
SHKBP1-228ENST00000602239 AIMP1Q12904 312 aaKnown RBP20.64■□□□□ 0.89
SHKBP1-228ENST00000602239 COL13A1Q5TAT6 717 aaPredicted RBP20.64■□□□□ 0.89
SHKBP1-228ENST00000602239 PPP1R42Q7Z4L9 355 aa20.64■□□□□ 0.89
SHKBP1-228ENST00000602239 CRAMP1Q96RY5 1269 aa20.64■□□□□ 0.89
SHKBP1-228ENST00000602239 RIC1Q4ADV7 1423 aa20.63■□□□□ 0.89
SHKBP1-228ENST00000602239 CHL1O00533 1208 aa20.63■□□□□ 0.89
SHKBP1-228ENST00000602239 PARP10Q53GL7 1025 aa20.63■□□□□ 0.89
SHKBP1-228ENST00000602239 XAGE3Q8WTP9 111 aa20.63■□□□□ 0.89
SHKBP1-228ENST00000602239 RUNDC1Q96C34 613 aa20.63■□□□□ 0.89
SHKBP1-228ENST00000602239 RBM17Q96I25 401 aaKnown RBP20.63■□□□□ 0.89
SHKBP1-228ENST00000602239 UTP14AQ9BVJ6 771 aaKnown RBP20.63■□□□□ 0.89
SHKBP1-228ENST00000602239 ADAMTS8Q9UP79 889 aa20.63■□□□□ 0.89
SHKBP1-228ENST00000602239 LAS1LQ9Y4W2 734 aaKnown RBP20.63■□□□□ 0.89
SHKBP1-228ENST00000602239 EAPPQ56P03 285 aaPredicted RBP20.62■□□□□ 0.89
SHKBP1-228ENST00000602239 SLC10A5Q5PT55 438 aa20.62■□□□□ 0.89
SHKBP1-228ENST00000602239 CC2D2BQ6DHV5 1058 aa20.62■□□□□ 0.89
SHKBP1-228ENST00000602239 LDHDQ86WU2 507 aa20.62■□□□□ 0.89
SHKBP1-228ENST00000602239 COL4A5P29400 1685 aa20.61■□□□□ 0.89
SHKBP1-228ENST00000602239 RNF123Q5XPI4 1314 aa20.61■□□□□ 0.89
SHKBP1-228ENST00000602239 PPEF1O14829 653 aaPredicted RBP20.61■□□□□ 0.89
SHKBP1-228ENST00000602239 NLRP3Q96P20 1036 aa20.61■□□□□ 0.89
SHKBP1-228ENST00000602239 CREBZFQ9NS37 354 aa20.61■□□□□ 0.89
SHKBP1-228ENST00000602239 HACL1Q9UJ83 578 aa20.61■□□□□ 0.89
SHKBP1-228ENST00000602239 SCN4AP35499 1836 aa20.61■□□□□ 0.89
SHKBP1-228ENST00000602239 ITGBL1O95965 494 aaPredicted RBP20.6■□□□□ 0.89
SHKBP1-228ENST00000602239 EPHX2P34913 555 aa20.6■□□□□ 0.89
SHKBP1-228ENST00000602239 JDP2Q8WYK2 163 aa20.6■□□□□ 0.89
SHKBP1-228ENST00000602239 ZNF428Q96B54 188 aa20.6■□□□□ 0.89
SHKBP1-228ENST00000602239 PASKQ96RG2 1323 aa20.59■□□□□ 0.89
SHKBP1-228ENST00000602239 HCLS1P14317 486 aaPredicted RBP20.59■□□□□ 0.89
SHKBP1-228ENST00000602239 WDR43Q15061 677 aaKnown RBP eCLIP20.59■□□□□ 0.89
SHKBP1-228ENST00000602239 NLRP10Q86W26 655 aa20.59■□□□□ 0.89
SHKBP1-228ENST00000602239 GPC2Q8N158 579 aa20.59■□□□□ 0.89
SHKBP1-228ENST00000602239 DDX21Q9NR30 783 aaKnown RBP eCLIP20.59■□□□□ 0.89
SHKBP1-228ENST00000602239 MKRN1Q9UHC7 482 aaKnown RBP20.59■□□□□ 0.89
SHKBP1-228ENST00000602239 CLEC11AQ9Y240 323 aa20.59■□□□□ 0.89
SHKBP1-228ENST00000602239 HSPA1AP0DMV8 641 aaKnown RBP20.58■□□□□ 0.89
SHKBP1-228ENST00000602239 HSPA1BP0DMV9 641 aaKnown RBP20.58■□□□□ 0.89
SHKBP1-228ENST00000602239 TCIRG1Q13488 830 aa20.58■□□□□ 0.89
SHKBP1-228ENST00000602239 LARGE2Q8N3Y3 721 aa20.58■□□□□ 0.89
SHKBP1-228ENST00000602239 CHPF2Q9P2E5 772 aa20.58■□□□□ 0.89
SHKBP1-228ENST00000602239 GJA3Q9Y6H8 435 aa20.58■□□□□ 0.89
SHKBP1-228ENST00000602239 ABCC4O15439 1325 aa20.56■□□□□ 0.88
SHKBP1-228ENST00000602239 EIF6P56537 245 aaKnown RBP20.56■□□□□ 0.88
SHKBP1-228ENST00000602239 GRIPAP1Q4V328 841 aa20.56■□□□□ 0.88
SHKBP1-228ENST00000602239 MAP1SQ66K74 1059 aaPredicted RBP20.56■□□□□ 0.88
SHKBP1-228ENST00000602239 TRMT112Q9UI30 125 aaKnown RBP20.56■□□□□ 0.88
SHKBP1-228ENST00000602239 ATP6V0A2Q9Y487 856 aa20.56■□□□□ 0.88
SHKBP1-228ENST00000602239 HSP90AB3PQ58FF7 597 aa20.55■□□□□ 0.88
SHKBP1-228ENST00000602239 PRKRIP1Q9H875 184 aaPredicted RBP20.55■□□□□ 0.88
SHKBP1-228ENST00000602239 EPS15P42566 896 aa20.54■□□□□ 0.88
SHKBP1-228ENST00000602239 AOC3Q16853 763 aa20.54■□□□□ 0.88
SHKBP1-228ENST00000602239 HDGFL1Q5TGJ6 251 aa20.54■□□□□ 0.88
SHKBP1-228ENST00000602239 PNMA8AQ86V59 439 aaPredicted RBP20.54■□□□□ 0.88
SHKBP1-228ENST00000602239 CNTROBQ8N137 903 aa20.54■□□□□ 0.88
SHKBP1-228ENST00000602239 PPIP5K2O43314 1243 aa20.53■□□□□ 0.88
SHKBP1-228ENST00000602239 SCNN1DP51172 638 aa20.53■□□□□ 0.88
SHKBP1-228ENST00000602239 ADAMTSL1Q8N6G6 1762 aa20.53■□□□□ 0.88
SHKBP1-228ENST00000602239 TMEM88BA6NKF7 163 aa20.52■□□□□ 0.88
SHKBP1-228ENST00000602239 BBOX1O75936 387 aa20.52■□□□□ 0.88
SHKBP1-228ENST00000602239 ANKRD13DQ6ZTN6 518 aa20.52■□□□□ 0.88
SHKBP1-228ENST00000602239 CFAP44Q96MT7 982 aa20.52■□□□□ 0.88
SHKBP1-228ENST00000602239 SH3TC1Q8TE82 1336 aa20.52■□□□□ 0.87
SHKBP1-228ENST00000602239 CNTNAP1P78357 1384 aa20.51■□□□□ 0.87
SHKBP1-228ENST00000602239 LTBP1Q14766 1721 aa20.51■□□□□ 0.87
SHKBP1-228ENST00000602239 DUSP27Q5VZP5 1158 aa20.51■□□□□ 0.87
SHKBP1-228ENST00000602239 SP8Q8IXZ3 490 aa20.51■□□□□ 0.87
SHKBP1-228ENST00000602239 NIM1KQ8IY84 436 aa20.51■□□□□ 0.87
SHKBP1-228ENST00000602239 PLBD2Q8NHP8 589 aa20.51■□□□□ 0.87
SHKBP1-228ENST00000602239 RTFDC1Q9BY42 306 aaPredicted RBP20.51■□□□□ 0.87
SHKBP1-228ENST00000602239 TMX4Q9H1E5 349 aaPredicted RBP20.51■□□□□ 0.87
SHKBP1-228ENST00000602239 MBIPQ9NS73 344 aa20.51■□□□□ 0.87
SHKBP1-228ENST00000602239 DBF4Q9UBU7 674 aaPredicted RBP20.51■□□□□ 0.87
SHKBP1-228ENST00000602239 ANKRD36CQ5JPF3 1778 aa20.51■□□□□ 0.87
SHKBP1-228ENST00000602239 LAMB2P55268 1798 aa20.5■□□□□ 0.87
SHKBP1-228ENST00000602239 ATP5J2-PTCD1G3V325 749 aa20.5■□□□□ 0.87
SHKBP1-228ENST00000602239 APAF1O14727 1248 aa20.5■□□□□ 0.87
SHKBP1-228ENST00000602239 ZNF853P0CG23 659 aa20.5■□□□□ 0.87
SHKBP1-228ENST00000602239 ISCA1Q9BUE6 129 aa20.5■□□□□ 0.87
SHKBP1-228ENST00000602239 HOXB7P09629 217 aa20.49■□□□□ 0.87
SHKBP1-228ENST00000602239 LMOD1P29536 600 aaPredicted RBP20.49■□□□□ 0.87
SHKBP1-228ENST00000602239 VEGFBP49765 207 aa20.49■□□□□ 0.87
SHKBP1-228ENST00000602239 FMR1Q06787 632 aaKnown RBP eCLIP20.49■□□□□ 0.87
SHKBP1-228ENST00000602239 CXCL9Q07325 125 aa20.49■□□□□ 0.87
SHKBP1-228ENST00000602239 DDX46Q7L014 1031 aaKnown RBP20.49■□□□□ 0.87
SHKBP1-228ENST00000602239 FAM89AQ96GI7 184 aa20.49■□□□□ 0.87
SHKBP1-228ENST00000602239 TAF1P21675 1872 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms