RNA–Protein interactions for RNA: ENST00000598886.1

SMG9-208, Transcript of SMG9, nonsense mediated mRNA decay factor, humanhuman

TSL 2

Gene SMG9, Length 681 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG9-208ENST00000598886 TRIM35Q9UPQ4 493 aa20.64■□□□□ 0.89
SMG9-208ENST00000598886 ALDH1B1P30837 517 aa20.63■□□□□ 0.89
SMG9-208ENST00000598886 LRRC37AA6NMS7 1700 aa20.63■□□□□ 0.89
SMG9-208ENST00000598886 TAF1P21675 1872 aa20.62■□□□□ 0.89
SMG9-208ENST00000598886 CHL1O00533 1208 aa20.62■□□□□ 0.89
SMG9-208ENST00000598886 ANXA1P04083 346 aa20.62■□□□□ 0.89
SMG9-208ENST00000598886 RTKN2Q8IZC4 609 aa20.62■□□□□ 0.89
SMG9-208ENST00000598886 PSMD1Q99460 953 aa20.62■□□□□ 0.89
SMG9-208ENST00000598886 FZD9O00144 591 aa20.61■□□□□ 0.89
SMG9-208ENST00000598886 LMOD3Q0VAK6 560 aa20.61■□□□□ 0.89
SMG9-208ENST00000598886 KRT24Q2M2I5 525 aa20.61■□□□□ 0.89
SMG9-208ENST00000598886 CCDC146Q8IYE0 955 aa20.61■□□□□ 0.89
SMG9-208ENST00000598886 GTF2E1P29083 439 aaPredicted RBP20.6■□□□□ 0.89
SMG9-208ENST00000598886 IARSP41252 1262 aaKnown RBP20.6■□□□□ 0.89
SMG9-208ENST00000598886 PARP10Q53GL7 1025 aa20.59■□□□□ 0.89
SMG9-208ENST00000598886 SLC10A5Q5PT55 438 aa20.59■□□□□ 0.89
SMG9-208ENST00000598886 CHADLQ6NUI6 762 aa20.59■□□□□ 0.89
SMG9-208ENST00000598886 SYNE4Q8N205 404 aa20.59■□□□□ 0.89
SMG9-208ENST00000598886 RUNDC1Q96C34 613 aa20.59■□□□□ 0.89
SMG9-208ENST00000598886 CRAMP1Q96RY5 1269 aa20.59■□□□□ 0.89
SMG9-208ENST00000598886 TAF1DQ9H5J8 278 aaPredicted RBP20.59■□□□□ 0.89
SMG9-208ENST00000598886 PASKQ96RG2 1323 aa20.58■□□□□ 0.89
SMG9-208ENST00000598886 COL4A1P02462 1669 aa20.58■□□□□ 0.89
SMG9-208ENST00000598886 EIF2S2P20042 333 aaKnown RBP20.58■□□□□ 0.89
SMG9-208ENST00000598886 DUOX1Q9NRD9 1551 aa20.58■□□□□ 0.88
SMG9-208ENST00000598886 CC2D2BQ6DHV5 1058 aa20.57■□□□□ 0.88
SMG9-208ENST00000598886 ADAMTS8Q9UP79 889 aa20.57■□□□□ 0.88
SMG9-208ENST00000598886 RNF123Q5XPI4 1314 aa20.56■□□□□ 0.88
SMG9-208ENST00000598886 IQCA1LA6NCM1 817 aa20.56■□□□□ 0.88
SMG9-208ENST00000598886 PPP1R42Q7Z4L9 355 aa20.56■□□□□ 0.88
SMG9-208ENST00000598886 COPS6Q7L5N1 327 aa20.55■□□□□ 0.88
SMG9-208ENST00000598886 NLRP10Q86W26 655 aa20.55■□□□□ 0.88
SMG9-208ENST00000598886 XAGE3Q8WTP9 111 aa20.55■□□□□ 0.88
SMG9-208ENST00000598886 RPGRQ92834 1020 aaKnown RBP20.55■□□□□ 0.88
SMG9-208ENST00000598886 PRKRIP1Q9H875 184 aaPredicted RBP20.55■□□□□ 0.88
SMG9-208ENST00000598886 DDX21Q9NR30 783 aaKnown RBP eCLIP20.55■□□□□ 0.88
SMG9-208ENST00000598886 NEUROD2Q15784 382 aa20.54■□□□□ 0.88
SMG9-208ENST00000598886 LDHDQ86WU2 507 aa20.54■□□□□ 0.88
SMG9-208ENST00000598886 PPEF1O14829 653 aaPredicted RBP20.53■□□□□ 0.88
SMG9-208ENST00000598886 ITGBL1O95965 494 aaPredicted RBP20.53■□□□□ 0.88
SMG9-208ENST00000598886 GPC2Q8N158 579 aa20.53■□□□□ 0.88
SMG9-208ENST00000598886 NECTIN2Q92692 538 aa20.53■□□□□ 0.88
SMG9-208ENST00000598886 RBM17Q96I25 401 aaKnown RBP20.53■□□□□ 0.88
SMG9-208ENST00000598886 UTP14AQ9BVJ6 771 aaKnown RBP20.53■□□□□ 0.88
SMG9-208ENST00000598886 CREBZFQ9NS37 354 aa20.53■□□□□ 0.88
SMG9-208ENST00000598886 CHPF2Q9P2E5 772 aa20.53■□□□□ 0.88
SMG9-208ENST00000598886 ABCC4O15439 1325 aa20.53■□□□□ 0.88
SMG9-208ENST00000598886 HOXB7P09629 217 aa20.52■□□□□ 0.88
SMG9-208ENST00000598886 ZNF853P0CG23 659 aa20.52■□□□□ 0.88
SMG9-208ENST00000598886 GRIPAP1Q4V328 841 aa20.52■□□□□ 0.88
SMG9-208ENST00000598886 TCIRG1Q13488 830 aa20.51■□□□□ 0.87
SMG9-208ENST00000598886 WDR43Q15061 677 aaKnown RBP eCLIP20.51■□□□□ 0.87
SMG9-208ENST00000598886 NLRP3Q96P20 1036 aa20.51■□□□□ 0.87
SMG9-208ENST00000598886 HACL1Q9UJ83 578 aa20.51■□□□□ 0.87
SMG9-208ENST00000598886 ATP6V0A2Q9Y487 856 aa20.51■□□□□ 0.87
SMG9-208ENST00000598886 EPHX2P34913 555 aa20.5■□□□□ 0.87
SMG9-208ENST00000598886 HSP90AB3PQ58FF7 597 aa20.5■□□□□ 0.87
SMG9-208ENST00000598886 CFAP44Q96MT7 982 aa20.5■□□□□ 0.87
SMG9-208ENST00000598886 THSD7BQ9C0I4 1608 aa20.49■□□□□ 0.87
SMG9-208ENST00000598886 AIMP1Q12904 312 aaKnown RBP20.49■□□□□ 0.87
SMG9-208ENST00000598886 COL13A1Q5TAT6 717 aaPredicted RBP20.49■□□□□ 0.87
SMG9-208ENST00000598886 RTFDC1Q9BY42 306 aaPredicted RBP20.49■□□□□ 0.87
SMG9-208ENST00000598886 TRPM7Q96QT4 1865 aa20.49■□□□□ 0.87
SMG9-208ENST00000598886 CNTNAP1P78357 1384 aa20.48■□□□□ 0.87
SMG9-208ENST00000598886 HCLS1P14317 486 aaPredicted RBP20.48■□□□□ 0.87
SMG9-208ENST00000598886 SCNN1DP51172 638 aa20.48■□□□□ 0.87
SMG9-208ENST00000598886 HDGFL1Q5TGJ6 251 aa20.48■□□□□ 0.87
SMG9-208ENST00000598886 JDP2Q8WYK2 163 aa20.48■□□□□ 0.87
SMG9-208ENST00000598886 ISCA1Q9BUE6 129 aa20.48■□□□□ 0.87
SMG9-208ENST00000598886 MBIPQ9NS73 344 aa20.48■□□□□ 0.87
SMG9-208ENST00000598886 PLBD2Q8NHP8 589 aa20.47■□□□□ 0.87
SMG9-208ENST00000598886 LAS1LQ9Y4W2 734 aaKnown RBP20.47■□□□□ 0.87
SMG9-208ENST00000598886 SH3TC1Q8TE82 1336 aa20.47■□□□□ 0.87
SMG9-208ENST00000598886 TCERG1O14776 1098 aaKnown RBP20.46■□□□□ 0.87
SMG9-208ENST00000598886 HSPA1AP0DMV8 641 aaKnown RBP20.46■□□□□ 0.87
SMG9-208ENST00000598886 HSPA1BP0DMV9 641 aaKnown RBP20.46■□□□□ 0.87
SMG9-208ENST00000598886 LARGE2Q8N3Y3 721 aa20.46■□□□□ 0.87
SMG9-208ENST00000598886 EAPPQ56P03 285 aaPredicted RBP20.45■□□□□ 0.86
SMG9-208ENST00000598886 DUSP27Q5VZP5 1158 aa20.45■□□□□ 0.86
SMG9-208ENST00000598886 PNMA8AQ86V59 439 aaPredicted RBP20.45■□□□□ 0.86
SMG9-208ENST00000598886 DBF4Q9UBU7 674 aaPredicted RBP20.45■□□□□ 0.86
SMG9-208ENST00000598886 TRMT112Q9UI30 125 aaKnown RBP20.45■□□□□ 0.86
SMG9-208ENST00000598886 AOC3Q16853 763 aa20.44■□□□□ 0.86
SMG9-208ENST00000598886 SP8Q8IXZ3 490 aa20.44■□□□□ 0.86
SMG9-208ENST00000598886 VPS33BQ9H267 617 aa20.44■□□□□ 0.86
SMG9-208ENST00000598886 MKRN1Q9UHC7 482 aaKnown RBP20.44■□□□□ 0.86
SMG9-208ENST00000598886 APAF1O14727 1248 aa20.43■□□□□ 0.86
SMG9-208ENST00000598886 BBOX1O75936 387 aa20.43■□□□□ 0.86
SMG9-208ENST00000598886 EIF6P56537 245 aaKnown RBP20.43■□□□□ 0.86
SMG9-208ENST00000598886 GRAPQ13588 217 aa20.43■□□□□ 0.86
SMG9-208ENST00000598886 MAP1SQ66K74 1059 aaPredicted RBP20.43■□□□□ 0.86
SMG9-208ENST00000598886 ANKRD13DQ6ZTN6 518 aa20.43■□□□□ 0.86
SMG9-208ENST00000598886 GRAPLQ8TC17 118 aaPredicted RBP20.43■□□□□ 0.86
SMG9-208ENST00000598886 PPIP5K2O43314 1243 aa20.42■□□□□ 0.86
SMG9-208ENST00000598886 EPS15P42566 896 aa20.42■□□□□ 0.86
SMG9-208ENST00000598886 TRIM28Q13263 835 aaKnown RBP20.42■□□□□ 0.86
SMG9-208ENST00000598886 IFT57Q9NWB7 429 aa20.42■□□□□ 0.86
SMG9-208ENST00000598886 GJA3Q9Y6H8 435 aa20.42■□□□□ 0.86
SMG9-208ENST00000598886 TMEM88BA6NKF7 163 aa20.41■□□□□ 0.86
SMG9-208ENST00000598886 KIAA2012Q0VF49 1180 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms