RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 ERBB4Q15303 1308 aa16.52■□□□□ 0.24
TRIM28-212ENST00000597995 CAPN15O75808 1086 aa16.52■□□□□ 0.24
TRIM28-212ENST00000597995 RPGRQ92834 1020 aaKnown RBP16.52■□□□□ 0.24
TRIM28-212ENST00000597995 CLEC11AQ9Y240 323 aa16.52■□□□□ 0.24
TRIM28-212ENST00000597995 MYL6BP14649 208 aa16.51■□□□□ 0.23
TRIM28-212ENST00000597995 SUSD4Q5VX71 490 aa16.51■□□□□ 0.23
TRIM28-212ENST00000597995 ZNF34Q8IZ26 560 aa16.51■□□□□ 0.23
TRIM28-212ENST00000597995 CRAMP1Q96RY5 1269 aa16.51■□□□□ 0.23
TRIM28-212ENST00000597995 ADAMTSL1Q8N6G6 1762 aa16.51■□□□□ 0.23
TRIM28-212ENST00000597995 RNF123Q5XPI4 1314 aa16.5■□□□□ 0.23
TRIM28-212ENST00000597995 UBN2Q6ZU65 1347 aa16.5■□□□□ 0.23
TRIM28-212ENST00000597995 GPTP24298 496 aa16.5■□□□□ 0.23
TRIM28-212ENST00000597995 EIF6P56537 245 aaKnown RBP16.5■□□□□ 0.23
TRIM28-212ENST00000597995 DDX10Q13206 875 aaKnown RBP16.5■□□□□ 0.23
TRIM28-212ENST00000597995 GIGYF2Q6Y7W6 1299 aaKnown RBP16.5■□□□□ 0.23
TRIM28-212ENST00000597995 CNTROBQ8N137 903 aa16.5■□□□□ 0.23
TRIM28-212ENST00000597995 RBM17Q96I25 401 aaKnown RBP16.5■□□□□ 0.23
TRIM28-212ENST00000597995 VEGFBP49765 207 aa16.49■□□□□ 0.23
TRIM28-212ENST00000597995 PARP10Q53GL7 1025 aa16.49■□□□□ 0.23
TRIM28-212ENST00000597995 THUMPD2Q9BTF0 503 aaKnown RBP16.49■□□□□ 0.23
TRIM28-212ENST00000597995 ZBTB3Q9H5J0 574 aa16.49■□□□□ 0.23
TRIM28-212ENST00000597995 PRDM10Q9NQV6 1147 aa16.49■□□□□ 0.23
TRIM28-212ENST00000597995 MAPK8IP3Q9UPT6 1336 aa16.48■□□□□ 0.23
TRIM28-212ENST00000597995 FOXN1O15353 648 aa16.48■□□□□ 0.23
TRIM28-212ENST00000597995 NTSR2O95665 410 aa16.48■□□□□ 0.23
TRIM28-212ENST00000597995 PPP1R42Q7Z4L9 355 aa16.48■□□□□ 0.23
TRIM28-212ENST00000597995 RASSF10A6NK89 507 aa16.47■□□□□ 0.23
TRIM28-212ENST00000597995 LMOD1P29536 600 aaPredicted RBP16.47■□□□□ 0.23
TRIM28-212ENST00000597995 SLC10A5Q5PT55 438 aa16.47■□□□□ 0.23
TRIM28-212ENST00000597995 MAP1SQ66K74 1059 aaPredicted RBP16.47■□□□□ 0.23
TRIM28-212ENST00000597995 LARGE2Q8N3Y3 721 aa16.47■□□□□ 0.23
TRIM28-212ENST00000597995 AIDAQ96BJ3 306 aa16.47■□□□□ 0.23
TRIM28-212ENST00000597995 NLRP3Q96P20 1036 aa16.47■□□□□ 0.23
TRIM28-212ENST00000597995 VPS33BQ9H267 617 aa16.47■□□□□ 0.23
TRIM28-212ENST00000597995 BABAM1Q9NWV8 329 aa16.47■□□□□ 0.23
TRIM28-212ENST00000597995 PPEF1O14829 653 aaPredicted RBP16.46■□□□□ 0.23
TRIM28-212ENST00000597995 CTCFP49711 727 aaPredicted RBP16.46■□□□□ 0.23
TRIM28-212ENST00000597995 DEFB115Q30KQ5 88 aa16.46■□□□□ 0.23
TRIM28-212ENST00000597995 LRP10Q7Z4F1 713 aa16.46■□□□□ 0.23
TRIM28-212ENST00000597995 WBP1LQ9NX94 342 aa16.46■□□□□ 0.23
TRIM28-212ENST00000597995 TSPYL4Q9UJ04 414 aa16.46■□□□□ 0.23
TRIM28-212ENST00000597995 GJA3Q9Y6H8 435 aa16.46■□□□□ 0.23
TRIM28-212ENST00000597995 PDIA6Q15084 440 aa16.45■□□□□ 0.22
TRIM28-212ENST00000597995 TMX4Q9H1E5 349 aaPredicted RBP16.45■□□□□ 0.22
TRIM28-212ENST00000597995 COL4A5P29400 1685 aa16.44■□□□□ 0.22
TRIM28-212ENST00000597995 SCNN1DP51172 638 aa16.44■□□□□ 0.22
TRIM28-212ENST00000597995 RALBP1Q15311 655 aa16.44■□□□□ 0.22
TRIM28-212ENST00000597995 C3orf67Q6ZVT6 689 aa16.44■□□□□ 0.22
TRIM28-212ENST00000597995 USP50Q70EL3 339 aaPredicted RBP16.44■□□□□ 0.22
TRIM28-212ENST00000597995 NIM1KQ8IY84 436 aa16.44■□□□□ 0.22
TRIM28-212ENST00000597995 UTP14AQ9BVJ6 771 aaKnown RBP16.44■□□□□ 0.22
TRIM28-212ENST00000597995 DDX21Q9NR30 783 aaKnown RBP eCLIP16.44■□□□□ 0.22
TRIM28-212ENST00000597995 ATP6V0A2Q9Y487 856 aa16.44■□□□□ 0.22
TRIM28-212ENST00000597995 EPS15P42566 896 aa16.43■□□□□ 0.22
TRIM28-212ENST00000597995 RIPK4P57078 832 aa16.43■□□□□ 0.22
TRIM28-212ENST00000597995 PPIP5K2O43314 1243 aa16.42■□□□□ 0.22
TRIM28-212ENST00000597995 BBOX1O75936 387 aa16.42■□□□□ 0.22
TRIM28-212ENST00000597995 EIF2S2P20042 333 aaKnown RBP16.42■□□□□ 0.22
TRIM28-212ENST00000597995 MAP2K1Q02750 393 aaPredicted RBP16.42■□□□□ 0.22
TRIM28-212ENST00000597995 LMOD3Q0VAK6 560 aa16.42■□□□□ 0.22
TRIM28-212ENST00000597995 HSP90AB3PQ58FF7 597 aa16.42■□□□□ 0.22
TRIM28-212ENST00000597995 SUPT20HQ8NEM7 779 aa16.42■□□□□ 0.22
TRIM28-212ENST00000597995 RTFDC1Q9BY42 306 aaPredicted RBP16.42■□□□□ 0.22
TRIM28-212ENST00000597995 WDR33Q9C0J8 1336 aaKnown RBP16.42■□□□□ 0.22
TRIM28-212ENST00000597995 LTBP1Q14766 1721 aa16.42■□□□□ 0.22
TRIM28-212ENST00000597995 TCERG1O14776 1098 aaKnown RBP16.41■□□□□ 0.22
TRIM28-212ENST00000597995 ABT1Q9ULW3 272 aaKnown RBP16.41■□□□□ 0.22
TRIM28-212ENST00000597995 TMPOP42166 694 aaKnown RBP16.4■□□□□ 0.22
TRIM28-212ENST00000597995 AOC3Q16853 763 aa16.4■□□□□ 0.22
TRIM28-212ENST00000597995 PROSER3Q2NL68 480 aa16.4■□□□□ 0.22
TRIM28-212ENST00000597995 SP8Q8IXZ3 490 aa16.4■□□□□ 0.22
TRIM28-212ENST00000597995 ZNRF3Q9ULT6 936 aa16.4■□□□□ 0.22
TRIM28-212ENST00000597995 ABCC4O15439 1325 aa16.4■□□□□ 0.22
TRIM28-212ENST00000597995 LBX1P52954 281 aa16.39■□□□□ 0.21
TRIM28-212ENST00000597995 TCIRG1Q13488 830 aa16.39■□□□□ 0.21
TRIM28-212ENST00000597995 COPS6Q7L5N1 327 aa16.39■□□□□ 0.21
TRIM28-212ENST00000597995 SLC51AQ86UW1 340 aa16.39■□□□□ 0.21
TRIM28-212ENST00000597995 NLRP10Q86W26 655 aa16.39■□□□□ 0.21
TRIM28-212ENST00000597995 ADARB2Q9NS39 739 aaKnown RBP16.39■□□□□ 0.21
TRIM28-212ENST00000597995 GPRC5DQ9NZD1 345 aa16.39■□□□□ 0.21
TRIM28-212ENST00000597995 ANXA1P04083 346 aa16.38■□□□□ 0.21
TRIM28-212ENST00000597995 ECE1P42892 770 aa16.38■□□□□ 0.21
TRIM28-212ENST00000597995 CXCL9Q07325 125 aa16.38■□□□□ 0.21
TRIM28-212ENST00000597995 DPP8Q6V1X1 898 aaPredicted RBP16.38■□□□□ 0.21
TRIM28-212ENST00000597995 XAGE3Q8WTP9 111 aa16.38■□□□□ 0.21
TRIM28-212ENST00000597995 HSPA8P11142 646 aaKnown RBP16.37■□□□□ 0.21
TRIM28-212ENST00000597995 CST9Q5W186 159 aa16.37■□□□□ 0.21
TRIM28-212ENST00000597995 DDX46Q7L014 1031 aaKnown RBP16.37■□□□□ 0.21
TRIM28-212ENST00000597995 MPNDQ8N594 471 aa16.37■□□□□ 0.21
TRIM28-212ENST00000597995 MYBBP1AQ9BQG0 1328 aaKnown RBP16.37■□□□□ 0.21
TRIM28-212ENST00000597995 CHL1O00533 1208 aa16.36■□□□□ 0.21
TRIM28-212ENST00000597995 HCLS1P14317 486 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-212ENST00000597995 FMR1Q06787 632 aaKnown RBP eCLIP16.36■□□□□ 0.211e-10■■■□□ 18.5
TRIM28-212ENST00000597995 KIAA2012Q0VF49 1180 aa16.36■□□□□ 0.21
TRIM28-212ENST00000597995 AIMP1Q12904 312 aaKnown RBP16.36■□□□□ 0.21
TRIM28-212ENST00000597995 TMC4Q7Z404 712 aa16.36■□□□□ 0.21
TRIM28-212ENST00000597995 CAPNS2Q96L46 248 aa16.36■□□□□ 0.21
TRIM28-212ENST00000597995 PGAP2Q9UHJ9 254 aa16.36■□□□□ 0.21
TRIM28-212ENST00000597995 TRMT112Q9UI30 125 aaKnown RBP16.36■□□□□ 0.21
TRIM28-212ENST00000597995 TLL2Q9Y6L7 1015 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms