RNA–Protein interactions for RNA: ENST00000596624.1

PNKP-208, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 4

Gene PNKP, Length 548 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-208	ENST00000596624	NUTM1	Q86Y26	1132 aa		13.98	□□□□□ -0.17
PNKP-208	ENST00000596624	GPC2	Q8N158	579 aa		13.98	□□□□□ -0.17
PNKP-208	ENST00000596624	RRP7A	Q9Y3A4	280 aa	Known RBP	13.98	□□□□□ -0.17
PNKP-208	ENST00000596624	COL4A5	P29400	1685 aa		13.98	□□□□□ -0.17
PNKP-208	ENST00000596624	CNTNAP1	P78357	1384 aa		13.97	□□□□□ -0.17
PNKP-208	ENST00000596624	RNF123	Q5XPI4	1314 aa		13.97	□□□□□ -0.17
PNKP-208	ENST00000596624	FAM177B	A6PVY3	158 aa		13.97	□□□□□ -0.17
PNKP-208	ENST00000596624	GTF2E1	P29083	439 aa	Predicted RBP	13.97	□□□□□ -0.17
PNKP-208	ENST00000596624	PNMA8A	Q86V59	439 aa	Predicted RBP	13.97	□□□□□ -0.17
PNKP-208	ENST00000596624	VPS33B	Q9H267	617 aa		13.97	□□□□□ -0.17
PNKP-208	ENST00000596624	HACL1	Q9UJ83	578 aa		13.97	□□□□□ -0.17
PNKP-208	ENST00000596624	MAPK8IP3	Q9UPT6	1336 aa		13.96	□□□□□ -0.17
PNKP-208	ENST00000596624	MYL6B	P14649	208 aa		13.96	□□□□□ -0.17
PNKP-208	ENST00000596624	TMPO	P42166	694 aa	Known RBP	13.96	□□□□□ -0.17
PNKP-208	ENST00000596624	NGEF	Q8N5V2	710 aa		13.96	□□□□□ -0.17
PNKP-208	ENST00000596624	ZBTB3	Q9H5J0	574 aa		13.96	□□□□□ -0.17
PNKP-208	ENST00000596624	EPHX2	P34913	555 aa		13.95	□□□□□ -0.18
PNKP-208	ENST00000596624	RIPK4	P57078	832 aa		13.95	□□□□□ -0.18
PNKP-208	ENST00000596624	C3orf67	Q6ZVT6	689 aa		13.95	□□□□□ -0.18
PNKP-208	ENST00000596624	PPP1R42	Q7Z4L9	355 aa		13.95	□□□□□ -0.18
PNKP-208	ENST00000596624	TSPYL4	Q9UJ04	414 aa		13.95	□□□□□ -0.18
PNKP-208	ENST00000596624	CHL1	O00533	1208 aa		13.94	□□□□□ -0.18
PNKP-208	ENST00000596624	GPT	P24298	496 aa		13.94	□□□□□ -0.18
PNKP-208	ENST00000596624	LMOD3	Q0VAK6	560 aa		13.94	□□□□□ -0.18
PNKP-208	ENST00000596624	LTBP1	Q14766	1721 aa		13.94	□□□□□ -0.18
PNKP-208	ENST00000596624	JDP2	Q8WYK2	163 aa		13.94	□□□□□ -0.18
PNKP-208	ENST00000596624	RPGR	Q92834	1020 aa	Known RBP	13.94	□□□□□ -0.18
PNKP-208	ENST00000596624	RBM17	Q96I25	401 aa	Known RBP	13.94	□□□□□ -0.18
PNKP-208	ENST00000596624	RTFDC1	Q9BY42	306 aa	Predicted RBP	13.94	□□□□□ -0.18
PNKP-208	ENST00000596624	TMEM88B	A6NKF7	163 aa		13.93	□□□□□ -0.18
PNKP-208	ENST00000596624	PROSER3	Q2NL68	480 aa		13.93	□□□□□ -0.18
PNKP-208	ENST00000596624	NLRP3	Q96P20	1036 aa		13.93	□□□□□ -0.18
PNKP-208	ENST00000596624	ATP6V0A2	Q9Y487	856 aa		13.93	□□□□□ -0.18
PNKP-208	ENST00000596624	ANKRD36C	Q5JPF3	1778 aa		13.93	□□□□□ -0.18
PNKP-208	ENST00000596624	RASSF10	A6NK89	507 aa		13.92	□□□□□ -0.18
PNKP-208	ENST00000596624	SCNN1D	P51172	638 aa		13.92	□□□□□ -0.18
PNKP-208	ENST00000596624	TNS4	Q8IZW8	715 aa		13.92	□□□□□ -0.18
PNKP-208	ENST00000596624	CNTROB	Q8N137	903 aa		13.92	□□□□□ -0.18
PNKP-208	ENST00000596624	UTP14A	Q9BVJ6	771 aa	Known RBP	13.92	□□□□□ -0.18
PNKP-208	ENST00000596624	MKRN1	Q9UHC7	482 aa	Known RBP	13.92	□□□□□ -0.18
PNKP-208	ENST00000596624	PPEF1	O14829	653 aa	Predicted RBP	13.91	□□□□□ -0.18
PNKP-208	ENST00000596624	BBOX1	O75936	387 aa		13.91	□□□□□ -0.18
PNKP-208	ENST00000596624	EIF6	P56537	245 aa	Known RBP	13.91	□□□□□ -0.18
PNKP-208	ENST00000596624	TCIRG1	Q13488	830 aa		13.91	□□□□□ -0.18
PNKP-208	ENST00000596624	HSP90AB3P	Q58FF7	597 aa		13.91	□□□□□ -0.18
PNKP-208	ENST00000596624	NLRP10	Q86W26	655 aa		13.91	□□□□□ -0.18
PNKP-208	ENST00000596624	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.91	□□□□□ -0.18
PNKP-208	ENST00000596624	TRIM35	Q9UPQ4	493 aa		13.91	□□□□□ -0.18
PNKP-208	ENST00000596624	HOXB7	P09629	217 aa		13.9	□□□□□ -0.18
PNKP-208	ENST00000596624	COPS6	Q7L5N1	327 aa		13.9	□□□□□ -0.18
PNKP-208	ENST00000596624	SLC51A	Q86UW1	340 aa		13.9	□□□□□ -0.18
PNKP-208	ENST00000596624	SP8	Q8IXZ3	490 aa		13.9	□□□□□ -0.18
PNKP-208	ENST00000596624	PRDM10	Q9NQV6	1147 aa		13.9	□□□□□ -0.18
PNKP-208	ENST00000596624	LAMB2	P55268	1798 aa		13.9	□□□□□ -0.18
PNKP-208	ENST00000596624	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.9	□□□□□ -0.19
PNKP-208	ENST00000596624	EIF2S2	P20042	333 aa	Known RBP	13.89	□□□□□ -0.19
PNKP-208	ENST00000596624	VEGFB	P49765	207 aa		13.89	□□□□□ -0.19
PNKP-208	ENST00000596624	EAPP	Q56P03	285 aa	Predicted RBP	13.89	□□□□□ -0.19
PNKP-208	ENST00000596624	USP50	Q70EL3	339 aa	Predicted RBP	13.89	□□□□□ -0.19
PNKP-208	ENST00000596624	LARGE2	Q8N3Y3	721 aa		13.89	□□□□□ -0.19
PNKP-208	ENST00000596624	WBP1L	Q9NX94	342 aa		13.89	□□□□□ -0.19
PNKP-208	ENST00000596624	ABCC4	O15439	1325 aa		13.89	□□□□□ -0.19
PNKP-208	ENST00000596624	ANXA1	P04083	346 aa		13.88	□□□□□ -0.19
PNKP-208	ENST00000596624	EPS15	P42566	896 aa		13.88	□□□□□ -0.19
PNKP-208	ENST00000596624	MAP1S	Q66K74	1059 aa	Predicted RBP	13.88	□□□□□ -0.19
PNKP-208	ENST00000596624	XAGE3	Q8WTP9	111 aa		13.88	□□□□□ -0.19
PNKP-208	ENST00000596624	RUNDC1	Q96C34	613 aa		13.88	□□□□□ -0.19
PNKP-208	ENST00000596624	PGAP2	Q9UHJ9	254 aa		13.88	□□□□□ -0.19
PNKP-208	ENST00000596624	FOXN1	O15353	648 aa		13.87	□□□□□ -0.19
PNKP-208	ENST00000596624	KIAA2012	Q0VF49	1180 aa		13.87	□□□□□ -0.19
PNKP-208	ENST00000596624	TRIM28	Q13263	835 aa	Known RBP	13.87	□□□□□ -0.19
PNKP-208	ENST00000596624	TMC4	Q7Z404	712 aa		13.87	□□□□□ -0.19
PNKP-208	ENST00000596624	NIM1K	Q8IY84	436 aa		13.87	□□□□□ -0.19
PNKP-208	ENST00000596624	SUPT20H	Q8NEM7	779 aa		13.87	□□□□□ -0.19
PNKP-208	ENST00000596624	GPRC5D	Q9NZD1	345 aa		13.87	□□□□□ -0.19
PNKP-208	ENST00000596624	ZNRF3	Q9ULT6	936 aa		13.87	□□□□□ -0.19
PNKP-208	ENST00000596624	CLEC11A	Q9Y240	323 aa		13.87	□□□□□ -0.19
PNKP-208	ENST00000596624	SH3TC1	Q8TE82	1336 aa		13.87	□□□□□ -0.19
PNKP-208	ENST00000596624	CDHR2	Q9BYE9	1310 aa		13.87	□□□□□ -0.19
PNKP-208	ENST00000596624	LRRC37A	A6NMS7	1700 aa		13.87	□□□□□ -0.19
PNKP-208	ENST00000596624	THSD7B	Q9C0I4	1608 aa		13.86	□□□□□ -0.19
PNKP-208	ENST00000596624	PPIP5K2	O43314	1243 aa		13.86	□□□□□ -0.19
PNKP-208	ENST00000596624	LMOD1	P29536	600 aa	Predicted RBP	13.86	□□□□□ -0.19
PNKP-208	ENST00000596624	CXCL9	Q07325	125 aa		13.86	□□□□□ -0.19
PNKP-208	ENST00000596624	GRAP	Q13588	217 aa		13.86	□□□□□ -0.19
PNKP-208	ENST00000596624	SF3B3	Q15393	1217 aa	Known RBP	13.86	□□□□□ -0.19
PNKP-208	ENST00000596624	KRT24	Q2M2I5	525 aa		13.86	□□□□□ -0.19
PNKP-208	ENST00000596624	DEFB115	Q30KQ5	88 aa		13.86	□□□□□ -0.19
PNKP-208	ENST00000596624	PLBD2	Q8NHP8	589 aa		13.86	□□□□□ -0.19
PNKP-208	ENST00000596624	GRAPL	Q8TC17	118 aa	Predicted RBP	13.86	□□□□□ -0.19
PNKP-208	ENST00000596624	ISCA1	Q9BUE6	129 aa		13.86	□□□□□ -0.19
PNKP-208	ENST00000596624	TRPM7	Q96QT4	1865 aa		13.86	□□□□□ -0.19
PNKP-208	ENST00000596624	DUOX1	Q9NRD9	1551 aa		13.85	□□□□□ -0.19
PNKP-208	ENST00000596624	ZNF853	P0CG23	659 aa		13.85	□□□□□ -0.19
PNKP-208	ENST00000596624	AOC3	Q16853	763 aa		13.85	□□□□□ -0.19
PNKP-208	ENST00000596624	CFAP44	Q96MT7	982 aa		13.85	□□□□□ -0.19
PNKP-208	ENST00000596624	GJA3	Q9Y6H8	435 aa		13.85	□□□□□ -0.19
PNKP-208	ENST00000596624	DDX60	Q8IY21	1712 aa	Known RBP	13.84	□□□□□ -0.19
PNKP-208	ENST00000596624	HCLS1	P14317	486 aa	Predicted RBP	13.84	□□□□□ -0.19
PNKP-208	ENST00000596624	CTCF	P49711	727 aa	Predicted RBP	13.84	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms