RNA–Protein interactions for RNA: ENST00000596445.5

VRK3-211, Transcript of vaccinia related kinase 3, humanhuman

TSL 5

Gene VRK3, Length 840 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-211ENST00000596445 RCAN3Q9UKA8 241 aa10.62□□□□□ -0.71
VRK3-211ENST00000596445 CD2APQ9Y5K6 639 aa10.62□□□□□ -0.71
VRK3-211ENST00000596445 N4BP2Q86UW6 1770 aaPredicted RBP10.62□□□□□ -0.71
VRK3-211ENST00000596445 NEURL1BA8MQ27 555 aa10.61□□□□□ -0.71
VRK3-211ENST00000596445 GTF2E1P29083 439 aaPredicted RBP10.61□□□□□ -0.71
VRK3-211ENST00000596445 BEND3Q5T5X7 828 aa10.61□□□□□ -0.71
VRK3-211ENST00000596445 SLC4A10Q6U841 1118 aa10.61□□□□□ -0.71
VRK3-211ENST00000596445 API5Q9BZZ5 524 aaKnown RBP10.61□□□□□ -0.71
VRK3-211ENST00000596445 FHDC1Q9C0D6 1143 aaPredicted RBP10.61□□□□□ -0.71
VRK3-211ENST00000596445 TRMT112Q9UI30 125 aaKnown RBP10.61□□□□□ -0.71
VRK3-211ENST00000596445 PXDNLA1KZ92 1463 aa10.61□□□□□ -0.71
VRK3-211ENST00000596445 CWF19L2Q2TBE0 894 aaKnown RBP10.6□□□□□ -0.71
VRK3-211ENST00000596445 ERFEQ4G0M1 354 aa10.6□□□□□ -0.71
VRK3-211ENST00000596445 ATF7IPQ6VMQ6 1270 aa10.6□□□□□ -0.71
VRK3-211ENST00000596445 NUTM1Q86Y26 1132 aa10.6□□□□□ -0.71
VRK3-211ENST00000596445 KLHL34Q8N239 644 aa10.6□□□□□ -0.71
VRK3-211ENST00000596445 ZBTB38Q8NAP3 1195 aaPredicted RBP10.6□□□□□ -0.71
VRK3-211ENST00000596445 FRAT1Q92837 279 aaPredicted RBP10.6□□□□□ -0.71
VRK3-211ENST00000596445 SYT17Q9BSW7 474 aa10.6□□□□□ -0.71
VRK3-211ENST00000596445 BRIP1Q9BX63 1249 aa10.6□□□□□ -0.71
VRK3-211ENST00000596445 SRCIN1Q9C0H9 1055 aa10.6□□□□□ -0.71
VRK3-211ENST00000596445 SH3TC1Q8TE82 1336 aa10.59□□□□□ -0.71
VRK3-211ENST00000596445 DDX60Q8IY21 1712 aaKnown RBP10.59□□□□□ -0.71
VRK3-211ENST00000596445 KIAA1551Q9HCM1 1747 aa10.59□□□□□ -0.71
VRK3-211ENST00000596445 ALDH1L1O75891 902 aa10.59□□□□□ -0.71
VRK3-211ENST00000596445 PCCAP05165 728 aaPredicted RBP10.59□□□□□ -0.71
VRK3-211ENST00000596445 TRIM27P14373 513 aa10.59□□□□□ -0.71
VRK3-211ENST00000596445 PDE6BP35913 854 aa10.59□□□□□ -0.71
VRK3-211ENST00000596445 TGFB2P61812 414 aa10.59□□□□□ -0.71
VRK3-211ENST00000596445 GCKRQ14397 625 aa10.59□□□□□ -0.71
VRK3-211ENST00000596445 SLC10A5Q5PT55 438 aa10.59□□□□□ -0.71
VRK3-211ENST00000596445 ZKSCAN2Q63HK3 967 aa10.59□□□□□ -0.71
VRK3-211ENST00000596445 CCDC24Q8N4L8 307 aa10.59□□□□□ -0.71
VRK3-211ENST00000596445 FAM89AQ96GI7 184 aa10.59□□□□□ -0.71
VRK3-211ENST00000596445 PDZRN3Q9UPQ7 1066 aa10.59□□□□□ -0.71
VRK3-211ENST00000596445 LAMB2P55268 1798 aa10.59□□□□□ -0.71
VRK3-211ENST00000596445 RIC1Q4ADV7 1423 aa10.58□□□□□ -0.72
VRK3-211ENST00000596445 DLEC1Q9Y238 1755 aa10.58□□□□□ -0.72
VRK3-211ENST00000596445 ABCC12Q96J65 1359 aa10.58□□□□□ -0.72
VRK3-211ENST00000596445 KLRG2A4D1S0 409 aaPredicted RBP10.58□□□□□ -0.72
VRK3-211ENST00000596445 HSP90B1P14625 803 aaKnown RBP10.58□□□□□ -0.72
VRK3-211ENST00000596445 CCT4P50991 539 aaKnown RBP10.58□□□□□ -0.72
VRK3-211ENST00000596445 SYNE4Q8N205 404 aa10.58□□□□□ -0.72
VRK3-211ENST00000596445 NLGN2Q8NFZ4 835 aa10.58□□□□□ -0.72
VRK3-211ENST00000596445 UTRNP46939 3433 aa10.58□□□□□ -0.72
VRK3-211ENST00000596445 MYH3P11055 1940 aa10.58□□□□□ -0.72
VRK3-211ENST00000596445 ABCC4O15439 1325 aa10.58□□□□□ -0.72
VRK3-211ENST00000596445 BRCA1P38398 1863 aaKnown RBP10.57□□□□□ -0.72
VRK3-211ENST00000596445 TNRC6CQ9HCJ0 1690 aaKnown RBP10.57□□□□□ -0.72
VRK3-211ENST00000596445 H0YIN7 160 aa10.57□□□□□ -0.72
VRK3-211ENST00000596445 H7C1W4 665 aa10.57□□□□□ -0.72
VRK3-211ENST00000596445 IRS4O14654 1257 aaPredicted RBP10.57□□□□□ -0.72
VRK3-211ENST00000596445 RTL5Q5HYW3 569 aaPredicted RBP10.57□□□□□ -0.72
VRK3-211ENST00000596445 NLRP3Q96P20 1036 aa10.57□□□□□ -0.72
VRK3-211ENST00000596445 C9orf78Q9NZ63 289 aaPredicted RBP10.57□□□□□ -0.72
VRK3-211ENST00000596445 COL11A2P13942 1736 aaPredicted RBP10.57□□□□□ -0.72
VRK3-211ENST00000596445 CDHR2Q9BYE9 1310 aa10.57□□□□□ -0.72
VRK3-211ENST00000596445 A0A0G2JLW4 131 aa10.56□□□□□ -0.72
VRK3-211ENST00000596445 GRM8O00222 908 aa10.56□□□□□ -0.72
VRK3-211ENST00000596445 MS4A1P11836 297 aa10.56□□□□□ -0.72
VRK3-211ENST00000596445 HCLS1P14317 486 aaPredicted RBP10.56□□□□□ -0.72
VRK3-211ENST00000596445 DPEP1P16444 411 aa10.56□□□□□ -0.72
VRK3-211ENST00000596445 CHRNA5P30532 468 aa10.56□□□□□ -0.72
VRK3-211ENST00000596445 CRY2Q49AN0 593 aa10.56□□□□□ -0.72
VRK3-211ENST00000596445 INTS3Q68E01 1043 aaKnown RBP10.56□□□□□ -0.72
VRK3-211ENST00000596445 UBE3BQ7Z3V4 1068 aa10.56□□□□□ -0.72
VRK3-211ENST00000596445 C2CD5Q86YS7 1000 aa10.56□□□□□ -0.72
VRK3-211ENST00000596445 DZIP1LQ8IYY4 767 aaKnown RBP10.56□□□□□ -0.72
VRK3-211ENST00000596445 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.56□□□□□ -0.72
VRK3-211ENST00000596445 JARID2Q92833 1246 aaPredicted RBP10.56□□□□□ -0.72
VRK3-211ENST00000596445 CLUAP1Q96AJ1 413 aa10.56□□□□□ -0.72
VRK3-211ENST00000596445 TNNQ9UQP3 1299 aa10.56□□□□□ -0.72
VRK3-211ENST00000596445 PDE8AO60658 829 aa10.55□□□□□ -0.72
VRK3-211ENST00000596445 SRGNP10124 158 aa10.55□□□□□ -0.72
VRK3-211ENST00000596445 KCNA3P22001 575 aa10.55□□□□□ -0.72
VRK3-211ENST00000596445 CASP7P55210 303 aa10.55□□□□□ -0.72
VRK3-211ENST00000596445 FTSJ3Q8IY81 847 aaKnown RBP10.55□□□□□ -0.72
VRK3-211ENST00000596445 UTYO14607 1347 aa10.55□□□□□ -0.72
VRK3-211ENST00000596445 PLIN1O60240 522 aa10.54□□□□□ -0.72
VRK3-211ENST00000596445 NPR1P16066 1061 aa10.54□□□□□ -0.72
VRK3-211ENST00000596445 CACNA1SQ13698 1873 aa10.54□□□□□ -0.72
VRK3-211ENST00000596445 STYK1Q6J9G0 422 aa10.54□□□□□ -0.72
VRK3-211ENST00000596445 C3orf67Q6ZVT6 689 aa10.54□□□□□ -0.72
VRK3-211ENST00000596445 MASTLQ96GX5 879 aa10.54□□□□□ -0.72
VRK3-211ENST00000596445 PLA2G12BQ9BX93 195 aa10.54□□□□□ -0.72
VRK3-211ENST00000596445 USP44Q9H0E7 712 aa10.54□□□□□ -0.72
VRK3-211ENST00000596445 PIM2Q9P1W9 311 aa10.54□□□□□ -0.72
VRK3-211ENST00000596445 NBPF7P0C2Y1 421 aaPredicted RBP10.53□□□□□ -0.72
VRK3-211ENST00000596445 RLBP1P12271 317 aa10.53□□□□□ -0.72
VRK3-211ENST00000596445 HOXA10P31260 410 aaPredicted RBP10.53□□□□□ -0.72
VRK3-211ENST00000596445 CTSWP56202 376 aa10.53□□□□□ -0.72
VRK3-211ENST00000596445 PDE3AQ14432 1141 aa10.53□□□□□ -0.72
VRK3-211ENST00000596445 SF3B3Q15393 1217 aaKnown RBP10.53□□□□□ -0.72
VRK3-211ENST00000596445 TMEM57Q8N5G2 664 aa10.53□□□□□ -0.72
VRK3-211ENST00000596445 TTLL6Q8N841 843 aa10.53□□□□□ -0.72
VRK3-211ENST00000596445 PANK1Q8TE04 598 aa10.53□□□□□ -0.72
VRK3-211ENST00000596445 RPGRQ92834 1020 aaKnown RBP10.53□□□□□ -0.72
VRK3-211ENST00000596445 ZNF622Q969S3 477 aaKnown RBP eCLIP10.53□□□□□ -0.72
VRK3-211ENST00000596445 ARFGEF1Q9Y6D6 1849 aa10.53□□□□□ -0.72
VRK3-211ENST00000596445 SLX4Q8IY92 1834 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms