RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 JARID2Q92833 1246 aaPredicted RBP13.49□□□□□ -0.25
LIG1-210ENST00000596332 KIF13BQ9NQT8 1826 aa13.48□□□□□ -0.25
LIG1-210ENST00000596332 FAM177BA6PVY3 158 aa13.48□□□□□ -0.25
LIG1-210ENST00000596332 RLBP1P12271 317 aa13.48□□□□□ -0.25
LIG1-210ENST00000596332 NLGN2Q8NFZ4 835 aa13.48□□□□□ -0.25
LIG1-210ENST00000596332 LINS1Q8NG48 757 aa13.48□□□□□ -0.25
LIG1-210ENST00000596332 SYT17Q9BSW7 474 aa13.48□□□□□ -0.25
LIG1-210ENST00000596332 FHDC1Q9C0D6 1143 aaPredicted RBP13.48□□□□□ -0.25
LIG1-210ENST00000596332 PXDNLA1KZ92 1463 aa13.48□□□□□ -0.25
LIG1-210ENST00000596332 ABCC4O15439 1325 aa13.47□□□□□ -0.25
LIG1-210ENST00000596332 ANKRD31Q8N7Z5 1873 aa13.47□□□□□ -0.25
LIG1-210ENST00000596332 GCKRQ14397 625 aa13.47□□□□□ -0.25
LIG1-210ENST00000596332 ATF7IPQ6VMQ6 1270 aa13.47□□□□□ -0.25
LIG1-210ENST00000596332 TPTE2Q6XPS3 522 aa13.47□□□□□ -0.25
LIG1-210ENST00000596332 NBPF5PQ86XG9 351 aaPredicted RBP13.47□□□□□ -0.25
LIG1-210ENST00000596332 FAM89AQ96GI7 184 aa13.47□□□□□ -0.25
LIG1-210ENST00000596332 CD2APQ9Y5K6 639 aa13.47□□□□□ -0.25
LIG1-210ENST00000596332 UTYO14607 1347 aa13.46□□□□□ -0.25
LIG1-210ENST00000596332 PLIN1O60240 522 aa13.46□□□□□ -0.25
LIG1-210ENST00000596332 PCCAP05165 728 aaPredicted RBP13.46□□□□□ -0.25
LIG1-210ENST00000596332 ZBTB38Q8NAP3 1195 aaPredicted RBP13.46□□□□□ -0.25
LIG1-210ENST00000596332 KAZALD1Q96I82 304 aa13.46□□□□□ -0.25
LIG1-210ENST00000596332 UTP14AQ9BVJ6 771 aaKnown RBP13.46□□□□□ -0.25
LIG1-210ENST00000596332 BRIP1Q9BX63 1249 aa13.46□□□□□ -0.25
LIG1-210ENST00000596332 USP44Q9H0E7 712 aa13.46□□□□□ -0.25
LIG1-210ENST00000596332 RNF123Q5XPI4 1314 aa13.45□□□□□ -0.26
LIG1-210ENST00000596332 KIF16BQ96L93 1317 aa13.45□□□□□ -0.26
LIG1-210ENST00000596332 TNRC6CQ9HCJ0 1690 aaKnown RBP13.45□□□□□ -0.26
LIG1-210ENST00000596332 ALDH1L1O75891 902 aa13.45□□□□□ -0.26
LIG1-210ENST00000596332 INTS3Q68E01 1043 aaKnown RBP13.45□□□□□ -0.26
LIG1-210ENST00000596332 PPP1R42Q7Z4L9 355 aa13.45□□□□□ -0.26
LIG1-210ENST00000596332 CNBD1Q8NA66 436 aa13.45□□□□□ -0.26
LIG1-210ENST00000596332 API5Q9BZZ5 524 aaKnown RBP13.45□□□□□ -0.26
LIG1-210ENST00000596332 CWC25Q9NXE8 425 aaPredicted RBP13.45□□□□□ -0.26
LIG1-210ENST00000596332 TRMT112Q9UI30 125 aaKnown RBP13.45□□□□□ -0.26
LIG1-210ENST00000596332 RIC1Q4ADV7 1423 aa13.45□□□□□ -0.26
LIG1-210ENST00000596332 COL4A1P02462 1669 aa13.44□□□□□ -0.26
LIG1-210ENST00000596332 A0A0G2JLW4 131 aa13.44□□□□□ -0.26
LIG1-210ENST00000596332 NBPF7P0C2Y1 421 aaPredicted RBP13.44□□□□□ -0.26
LIG1-210ENST00000596332 HCLS1P14317 486 aaPredicted RBP13.44□□□□□ -0.26
LIG1-210ENST00000596332 DPEP1P16444 411 aa13.44□□□□□ -0.26
LIG1-210ENST00000596332 CHRNA5P30532 468 aa13.44□□□□□ -0.26
LIG1-210ENST00000596332 CRY2Q49AN0 593 aa13.44□□□□□ -0.26
LIG1-210ENST00000596332 EPHA10Q5JZY3 1008 aa13.44□□□□□ -0.26
LIG1-210ENST00000596332 C20orf194Q5TEA3 1177 aa13.44□□□□□ -0.26
LIG1-210ENST00000596332 ZKSCAN2Q63HK3 967 aa13.44□□□□□ -0.26
LIG1-210ENST00000596332 FRAT1Q92837 279 aaPredicted RBP13.44□□□□□ -0.26
LIG1-210ENST00000596332 CDHR2Q9BYE9 1310 aa13.43□□□□□ -0.26
LIG1-210ENST00000596332 SRGNP10124 158 aa13.43□□□□□ -0.26
LIG1-210ENST00000596332 TGFB2P61812 414 aa13.43□□□□□ -0.26
LIG1-210ENST00000596332 NEXNQ0ZGT2 675 aa13.43□□□□□ -0.26
LIG1-210ENST00000596332 RTL5Q5HYW3 569 aaPredicted RBP13.43□□□□□ -0.26
LIG1-210ENST00000596332 SLC4A10Q6U841 1118 aa13.43□□□□□ -0.26
LIG1-210ENST00000596332 CLUAP1Q96AJ1 413 aa13.43□□□□□ -0.26
LIG1-210ENST00000596332 SRCIN1Q9C0H9 1055 aa13.43□□□□□ -0.26
LIG1-210ENST00000596332 NYXQ9GZU5 481 aa13.43□□□□□ -0.26
LIG1-210ENST00000596332 SH3TC1Q8TE82 1336 aa13.42□□□□□ -0.26
LIG1-210ENST00000596332 DDX60Q8IY21 1712 aaKnown RBP13.42□□□□□ -0.26
LIG1-210ENST00000596332 IPO8O15397 1037 aaKnown RBP13.42□□□□□ -0.26
LIG1-210ENST00000596332 FOXO4P98177 505 aa13.42□□□□□ -0.26
LIG1-210ENST00000596332 SLC51AQ86UW1 340 aa13.42□□□□□ -0.26
LIG1-210ENST00000596332 TMEM57Q8N5G2 664 aa13.42□□□□□ -0.26
LIG1-210ENST00000596332 PLA2G12BQ9BX93 195 aa13.42□□□□□ -0.26
LIG1-210ENST00000596332 GRM8O00222 908 aa13.41□□□□□ -0.26
LIG1-210ENST00000596332 IRS4O14654 1257 aaPredicted RBP13.41□□□□□ -0.26
LIG1-210ENST00000596332 CSF1RP07333 972 aa13.41□□□□□ -0.26
LIG1-210ENST00000596332 HOXA10P31260 410 aaPredicted RBP13.41□□□□□ -0.26
LIG1-210ENST00000596332 SF3B3Q15393 1217 aaKnown RBP13.41□□□□□ -0.26
LIG1-210ENST00000596332 PPP4R3CPQ6ZMV5 832 aa13.41□□□□□ -0.26
LIG1-210ENST00000596332 UBE3BQ7Z3V4 1068 aa13.41□□□□□ -0.26
LIG1-210ENST00000596332 PANK1Q8TE04 598 aa13.41□□□□□ -0.26
LIG1-210ENST00000596332 COL11A2P13942 1736 aaPredicted RBP13.41□□□□□ -0.26
LIG1-210ENST00000596332 N4BP2Q86UW6 1770 aaPredicted RBP13.4□□□□□ -0.26
LIG1-210ENST00000596332 ZBTB7BO15156 539 aaPredicted RBP13.4□□□□□ -0.26
LIG1-210ENST00000596332 CCT4P50991 539 aaKnown RBP13.4□□□□□ -0.26
LIG1-210ENST00000596332 ST5P78524 1137 aa13.4□□□□□ -0.26
LIG1-210ENST00000596332 DZIP1LQ8IYY4 767 aaKnown RBP13.4□□□□□ -0.26
LIG1-210ENST00000596332 SUCLG2Q96I99 432 aa13.4□□□□□ -0.26
LIG1-210ENST00000596332 PPP1R1BQ9UD71 204 aaPredicted RBP13.4□□□□□ -0.26
LIG1-210ENST00000596332 PDE6BP35913 854 aa13.39□□□□□ -0.27
LIG1-210ENST00000596332 C2CD5Q86YS7 1000 aa13.39□□□□□ -0.27
LIG1-210ENST00000596332 TTLL11Q8NHH1 800 aa13.39□□□□□ -0.27
LIG1-210ENST00000596332 C7orf43Q8WVR3 580 aa13.39□□□□□ -0.27
LIG1-210ENST00000596332 MEIS3Q99687 375 aa13.39□□□□□ -0.27
LIG1-210ENST00000596332 LAMB2P55268 1798 aa13.38□□□□□ -0.27
LIG1-210ENST00000596332 PDE8AO60658 829 aa13.38□□□□□ -0.27
LIG1-210ENST00000596332 KCNA4P22459 653 aa13.38□□□□□ -0.27
LIG1-210ENST00000596332 ANKRD44Q8N8A2 993 aa13.38□□□□□ -0.27
LIG1-210ENST00000596332 BRCA1P38398 1863 aaKnown RBP13.38□□□□□ -0.27
LIG1-210ENST00000596332 GOLGB1Q14789 3259 aaKnown RBP13.37□□□□□ -0.27
LIG1-210ENST00000596332 YBX3P16989 372 aaKnown RBP eCLIP13.37□□□□□ -0.27
LIG1-210ENST00000596332 GTF2E1P29083 439 aaPredicted RBP13.37□□□□□ -0.27
LIG1-210ENST00000596332 RRP1P56182 461 aaKnown RBP13.37□□□□□ -0.27
LIG1-210ENST00000596332 PDE3AQ14432 1141 aa13.37□□□□□ -0.27
LIG1-210ENST00000596332 RABL6Q3YEC7 729 aaPredicted RBP13.37□□□□□ -0.27
LIG1-210ENST00000596332 STYK1Q6J9G0 422 aa13.37□□□□□ -0.27
LIG1-210ENST00000596332 KLHL34Q8N239 644 aa13.37□□□□□ -0.27
LIG1-210ENST00000596332 NLRP3Q96P20 1036 aa13.37□□□□□ -0.27
LIG1-210ENST00000596332 SEC31BQ9NQW1 1179 aa13.37□□□□□ -0.27
LIG1-210ENST00000596332 DLEC1Q9Y238 1755 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms