RNA–Protein interactions for RNA: ENST00000590035.5

RETREG3-209, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 2

Gene RETREG3, Length 518 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-209ENST00000590035 FZD9O00144 591 aa13.74□□□□□ -0.21
RETREG3-209ENST00000590035 NEFMP07197 916 aa13.74□□□□□ -0.21
RETREG3-209ENST00000590035 SUSD4Q5VX71 490 aa13.74□□□□□ -0.21
RETREG3-209ENST00000590035 CHADLQ6NUI6 762 aa13.74□□□□□ -0.21
RETREG3-209ENST00000590035 NUTM1Q86Y26 1132 aa13.74□□□□□ -0.21
RETREG3-209ENST00000590035 ZNF277Q9NRM2 450 aaPredicted RBP13.74□□□□□ -0.21
RETREG3-209ENST00000590035 ANKRD36CQ5JPF3 1778 aa13.73□□□□□ -0.21
RETREG3-209ENST00000590035 FAM177BA6PVY3 158 aa13.73□□□□□ -0.21
RETREG3-209ENST00000590035 TMPOP42166 694 aaKnown RBP13.73□□□□□ -0.21
RETREG3-209ENST00000590035 PROSER3Q2NL68 480 aa13.73□□□□□ -0.21
RETREG3-209ENST00000590035 C3orf67Q6ZVT6 689 aa13.73□□□□□ -0.21
RETREG3-209ENST00000590035 TAF1DQ9H5J8 278 aaPredicted RBP13.73□□□□□ -0.21
RETREG3-209ENST00000590035 RRP7AQ9Y3A4 280 aaKnown RBP13.73□□□□□ -0.21
RETREG3-209ENST00000590035 LTBP1Q14766 1721 aa13.73□□□□□ -0.21
RETREG3-209ENST00000590035 MYL6BP14649 208 aa13.72□□□□□ -0.21
RETREG3-209ENST00000590035 RIPK4P57078 832 aa13.72□□□□□ -0.21
RETREG3-209ENST00000590035 SLC10A5Q5PT55 438 aa13.72□□□□□ -0.21
RETREG3-209ENST00000590035 CC2D2BQ6DHV5 1058 aa13.72□□□□□ -0.21
RETREG3-209ENST00000590035 KIF6Q6ZMV9 814 aa13.72□□□□□ -0.21
RETREG3-209ENST00000590035 SLC51AQ86UW1 340 aa13.72□□□□□ -0.21
RETREG3-209ENST00000590035 CRAMP1Q96RY5 1269 aa13.72□□□□□ -0.21
RETREG3-209ENST00000590035 ZBTB3Q9H5J0 574 aa13.72□□□□□ -0.21
RETREG3-209ENST00000590035 SPINK5Q9NQ38 1064 aaPredicted RBP13.72□□□□□ -0.21
RETREG3-209ENST00000590035 TSPYL4Q9UJ04 414 aa13.72□□□□□ -0.21
RETREG3-209ENST00000590035 LAMB2P55268 1798 aa13.71□□□□□ -0.21
RETREG3-209ENST00000590035 IQCA1LA6NCM1 817 aa13.71□□□□□ -0.21
RETREG3-209ENST00000590035 CHL1O00533 1208 aa13.71□□□□□ -0.21
RETREG3-209ENST00000590035 ITGBL1O95965 494 aaPredicted RBP13.71□□□□□ -0.21
RETREG3-209ENST00000590035 GPTP24298 496 aa13.71□□□□□ -0.21
RETREG3-209ENST00000590035 IARSP41252 1262 aaKnown RBP13.71□□□□□ -0.21
RETREG3-209ENST00000590035 LDHDQ86WU2 507 aa13.71□□□□□ -0.21
RETREG3-209ENST00000590035 SYNE4Q8N205 404 aa13.71□□□□□ -0.21
RETREG3-209ENST00000590035 NGEFQ8N5V2 710 aa13.71□□□□□ -0.21
RETREG3-209ENST00000590035 CREBZFQ9NS37 354 aa13.71□□□□□ -0.21
RETREG3-209ENST00000590035 RNF123Q5XPI4 1314 aa13.7□□□□□ -0.22
RETREG3-209ENST00000590035 MYBBP1AQ9BQG0 1328 aaKnown RBP13.7□□□□□ -0.22
RETREG3-209ENST00000590035 PARP10Q53GL7 1025 aa13.7□□□□□ -0.22
RETREG3-209ENST00000590035 TRIM35Q9UPQ4 493 aa13.7□□□□□ -0.22
RETREG3-209ENST00000590035 GRIPAP1Q4V328 841 aa13.69□□□□□ -0.22
RETREG3-209ENST00000590035 COL13A1Q5TAT6 717 aaPredicted RBP13.69□□□□□ -0.22
RETREG3-209ENST00000590035 ANXA1P04083 346 aa13.68□□□□□ -0.22
RETREG3-209ENST00000590035 GTF2E1P29083 439 aaPredicted RBP13.68□□□□□ -0.22
RETREG3-209ENST00000590035 LMOD3Q0VAK6 560 aa13.68□□□□□ -0.22
RETREG3-209ENST00000590035 GPC2Q8N158 579 aa13.68□□□□□ -0.22
RETREG3-209ENST00000590035 PPP1R42Q7Z4L9 355 aa13.67□□□□□ -0.22
RETREG3-209ENST00000590035 NLRP10Q86W26 655 aa13.67□□□□□ -0.22
RETREG3-209ENST00000590035 RTFDC1Q9BY42 306 aaPredicted RBP13.67□□□□□ -0.22
RETREG3-209ENST00000590035 DDX21Q9NR30 783 aaKnown RBP eCLIP13.67□□□□□ -0.22
RETREG3-209ENST00000590035 HACL1Q9UJ83 578 aa13.67□□□□□ -0.22
RETREG3-209ENST00000590035 CNTNAP1P78357 1384 aa13.67□□□□□ -0.22
RETREG3-209ENST00000590035 LRRC37AA6NMS7 1700 aa13.67□□□□□ -0.22
RETREG3-209ENST00000590035 HOXB7P09629 217 aa13.66□□□□□ -0.22
RETREG3-209ENST00000590035 HSPA1AP0DMV8 641 aaKnown RBP13.66□□□□□ -0.22
RETREG3-209ENST00000590035 HSPA1BP0DMV9 641 aaKnown RBP13.66□□□□□ -0.22
RETREG3-209ENST00000590035 EPHX2P34913 555 aa13.66□□□□□ -0.22
RETREG3-209ENST00000590035 KRT24Q2M2I5 525 aa13.66□□□□□ -0.22
RETREG3-209ENST00000590035 RPGRQ92834 1020 aaKnown RBP13.66□□□□□ -0.22
RETREG3-209ENST00000590035 RUNDC1Q96C34 613 aa13.66□□□□□ -0.22
RETREG3-209ENST00000590035 RBM17Q96I25 401 aaKnown RBP13.66□□□□□ -0.22
RETREG3-209ENST00000590035 DDX60Q8IY21 1712 aaKnown RBP13.66□□□□□ -0.22
RETREG3-209ENST00000590035 DUOX1Q9NRD9 1551 aa13.66□□□□□ -0.22
RETREG3-209ENST00000590035 ABCC4O15439 1325 aa13.65□□□□□ -0.22
RETREG3-209ENST00000590035 PPEF1O14829 653 aaPredicted RBP13.65□□□□□ -0.22
RETREG3-209ENST00000590035 EIF2S2P20042 333 aaKnown RBP13.65□□□□□ -0.22
RETREG3-209ENST00000590035 SCNN1DP51172 638 aa13.65□□□□□ -0.22
RETREG3-209ENST00000590035 DDX10Q13206 875 aaKnown RBP13.65□□□□□ -0.22
RETREG3-209ENST00000590035 COPS6Q7L5N1 327 aa13.65□□□□□ -0.22
RETREG3-209ENST00000590035 XAGE3Q8WTP9 111 aa13.65□□□□□ -0.22
RETREG3-209ENST00000590035 UTP14AQ9BVJ6 771 aaKnown RBP13.65□□□□□ -0.22
RETREG3-209ENST00000590035 VPS33BQ9H267 617 aa13.65□□□□□ -0.22
RETREG3-209ENST00000590035 ATP6V0A2Q9Y487 856 aa13.65□□□□□ -0.22
RETREG3-209ENST00000590035 CAPN15O75808 1086 aa13.64□□□□□ -0.23
RETREG3-209ENST00000590035 ZNF853P0CG23 659 aa13.64□□□□□ -0.23
RETREG3-209ENST00000590035 TCIRG1Q13488 830 aa13.64□□□□□ -0.23
RETREG3-209ENST00000590035 HSP90AB3PQ58FF7 597 aa13.64□□□□□ -0.23
RETREG3-209ENST00000590035 PNMA8AQ86V59 439 aaPredicted RBP13.64□□□□□ -0.23
RETREG3-209ENST00000590035 CCDC146Q8IYE0 955 aa13.64□□□□□ -0.23
RETREG3-209ENST00000590035 NLRP3Q96P20 1036 aa13.64□□□□□ -0.23
RETREG3-209ENST00000590035 ADAMTS8Q9UP79 889 aa13.64□□□□□ -0.23
RETREG3-209ENST00000590035 COL4A1P02462 1669 aa13.63□□□□□ -0.23
RETREG3-209ENST00000590035 ATXN8OSP0DMR3 200 aa13.63□□□□□ -0.23
RETREG3-209ENST00000590035 JDP2Q8WYK2 163 aa13.63□□□□□ -0.23
RETREG3-209ENST00000590035 ISCA1Q9BUE6 129 aa13.63□□□□□ -0.23
RETREG3-209ENST00000590035 THSD7BQ9C0I4 1608 aa13.63□□□□□ -0.23
RETREG3-209ENST00000590035 TAF1P21675 1872 aa13.63□□□□□ -0.23
RETREG3-209ENST00000590035 CFAP44Q96MT7 982 aa13.62□□□□□ -0.23
RETREG3-209ENST00000590035 PRKRIP1Q9H875 184 aaPredicted RBP13.62□□□□□ -0.23
RETREG3-209ENST00000590035 CHPF2Q9P2E5 772 aa13.62□□□□□ -0.23
RETREG3-209ENST00000590035 MKRN1Q9UHC7 482 aaKnown RBP13.62□□□□□ -0.23
RETREG3-209ENST00000590035 RASSF10A6NK89 507 aa13.61□□□□□ -0.23
RETREG3-209ENST00000590035 TMEM88BA6NKF7 163 aa13.61□□□□□ -0.23
RETREG3-209ENST00000590035 BBOX1O75936 387 aa13.61□□□□□ -0.23
RETREG3-209ENST00000590035 HCLS1P14317 486 aaPredicted RBP13.61□□□□□ -0.23
RETREG3-209ENST00000590035 EIF6P56537 245 aaKnown RBP13.61□□□□□ -0.23
RETREG3-209ENST00000590035 TRIM28Q13263 835 aaKnown RBP13.61□□□□□ -0.23
RETREG3-209ENST00000590035 SP8Q8IXZ3 490 aa13.61□□□□□ -0.23
RETREG3-209ENST00000590035 CNTROBQ8N137 903 aa13.61□□□□□ -0.23
RETREG3-209ENST00000590035 LARGE2Q8N3Y3 721 aa13.61□□□□□ -0.23
RETREG3-209ENST00000590035 PLBD2Q8NHP8 589 aa13.61□□□□□ -0.23
RETREG3-209ENST00000590035 SH3TC1Q8TE82 1336 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms