RNA–Protein interactions for RNA: ENST00000578996.1

CDK5RAP3-211, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 2

Gene CDK5RAP3, Length 566 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-211ENST00000578996 RBM17Q96I25 401 aaKnown RBP12.02□□□□□ -0.49
CDK5RAP3-211ENST00000578996 PRKRIP1Q9H875 184 aaPredicted RBP12.02□□□□□ -0.49
CDK5RAP3-211ENST00000578996 TRIM35Q9UPQ4 493 aa12.02□□□□□ -0.49
CDK5RAP3-211ENST00000578996 IBTKQ9P2D0 1353 aaPredicted RBP12.02□□□□□ -0.49
CDK5RAP3-211ENST00000578996 PPEF1O14829 653 aaPredicted RBP12.01□□□□□ -0.49
CDK5RAP3-211ENST00000578996 HDGFL1Q5TGJ6 251 aa12.01□□□□□ -0.49
CDK5RAP3-211ENST00000578996 LRP10Q7Z4F1 713 aa12.01□□□□□ -0.49
CDK5RAP3-211ENST00000578996 ZNF428Q96B54 188 aa12.01□□□□□ -0.49
CDK5RAP3-211ENST00000578996 KLRG1Q96E93 195 aa12.01□□□□□ -0.49
CDK5RAP3-211ENST00000578996 NLRP3Q96P20 1036 aa12.01□□□□□ -0.49
CDK5RAP3-211ENST00000578996 UTP14AQ9BVJ6 771 aaKnown RBP12.01□□□□□ -0.49
CDK5RAP3-211ENST00000578996 ZNF541Q9H0D2 1346 aa12.01□□□□□ -0.49
CDK5RAP3-211ENST00000578996 DICER1Q9UPY3 1922 aaKnown RBP12.01□□□□□ -0.49
CDK5RAP3-211ENST00000578996 IQCA1LA6NCM1 817 aa12□□□□□ -0.49
CDK5RAP3-211ENST00000578996 CHL1O00533 1208 aa12□□□□□ -0.49
CDK5RAP3-211ENST00000578996 POTEIP0CG38 1075 aa12□□□□□ -0.49
CDK5RAP3-211ENST00000578996 POTEJP0CG39 1038 aa12□□□□□ -0.49
CDK5RAP3-211ENST00000578996 EAPPQ56P03 285 aaPredicted RBP12□□□□□ -0.49
CDK5RAP3-211ENST00000578996 HSP90AB3PQ58FF7 597 aa12□□□□□ -0.49
CDK5RAP3-211ENST00000578996 C3orf67Q6ZVT6 689 aa12□□□□□ -0.49
CDK5RAP3-211ENST00000578996 TMX4Q9H1E5 349 aaPredicted RBP12□□□□□ -0.49
CDK5RAP3-211ENST00000578996 CHPF2Q9P2E5 772 aa12□□□□□ -0.49
CDK5RAP3-211ENST00000578996 RIC1Q4ADV7 1423 aa12□□□□□ -0.49
CDK5RAP3-211ENST00000578996 CHADLQ6NUI6 762 aa11.99□□□□□ -0.49
CDK5RAP3-211ENST00000578996 SLC51AQ86UW1 340 aa11.99□□□□□ -0.49
CDK5RAP3-211ENST00000578996 JDP2Q8WYK2 163 aa11.99□□□□□ -0.49
CDK5RAP3-211ENST00000578996 DDX21Q9NR30 783 aaKnown RBP eCLIP11.99□□□□□ -0.49
CDK5RAP3-211ENST00000578996 TRMT112Q9UI30 125 aaKnown RBP11.99□□□□□ -0.49
CDK5RAP3-211ENST00000578996 RNF123Q5XPI4 1314 aa11.98□□□□□ -0.49
CDK5RAP3-211ENST00000578996 APAF1O14727 1248 aa11.98□□□□□ -0.49
CDK5RAP3-211ENST00000578996 HCLS1P14317 486 aaPredicted RBP11.98□□□□□ -0.49
CDK5RAP3-211ENST00000578996 HOXA10P31260 410 aaPredicted RBP11.98□□□□□ -0.49
CDK5RAP3-211ENST00000578996 CC2D2BQ6DHV5 1058 aa11.98□□□□□ -0.49
CDK5RAP3-211ENST00000578996 LARGE2Q8N3Y3 721 aa11.98□□□□□ -0.49
CDK5RAP3-211ENST00000578996 CRAMP1Q96RY5 1269 aa11.98□□□□□ -0.49
CDK5RAP3-211ENST00000578996 PSMD1Q99460 953 aa11.98□□□□□ -0.49
CDK5RAP3-211ENST00000578996 CLEC11AQ9Y240 323 aa11.98□□□□□ -0.49
CDK5RAP3-211ENST00000578996 GJA3Q9Y6H8 435 aa11.98□□□□□ -0.49
CDK5RAP3-211ENST00000578996 EIF6P56537 245 aaKnown RBP11.97□□□□□ -0.49
CDK5RAP3-211ENST00000578996 TCIRG1Q13488 830 aa11.97□□□□□ -0.49
CDK5RAP3-211ENST00000578996 IFFO2Q5TF58 517 aa11.97□□□□□ -0.49
CDK5RAP3-211ENST00000578996 DUSP27Q5VZP5 1158 aa11.97□□□□□ -0.49
CDK5RAP3-211ENST00000578996 NLRP10Q86W26 655 aa11.97□□□□□ -0.49
CDK5RAP3-211ENST00000578996 L3MBTL3Q96JM7 780 aaPredicted RBP11.97□□□□□ -0.49
CDK5RAP3-211ENST00000578996 CFAP44Q96MT7 982 aa11.97□□□□□ -0.49
CDK5RAP3-211ENST00000578996 TAF1DQ9H5J8 278 aaPredicted RBP11.97□□□□□ -0.49
CDK5RAP3-211ENST00000578996 MBIPQ9NS73 344 aa11.97□□□□□ -0.49
CDK5RAP3-211ENST00000578996 HACL1Q9UJ83 578 aa11.97□□□□□ -0.49
CDK5RAP3-211ENST00000578996 ABCC4O15439 1325 aa11.96□□□□□ -0.49
CDK5RAP3-211ENST00000578996 FZD9O00144 591 aa11.96□□□□□ -0.49
CDK5RAP3-211ENST00000578996 EPHX2P34913 555 aa11.96□□□□□ -0.49
CDK5RAP3-211ENST00000578996 LDHDQ86WU2 507 aa11.96□□□□□ -0.49
CDK5RAP3-211ENST00000578996 DBF4Q9UBU7 674 aaPredicted RBP11.96□□□□□ -0.49
CDK5RAP3-211ENST00000578996 SNED1Q8TER0 1413 aa11.95□□□□□ -0.5
CDK5RAP3-211ENST00000578996 ANKRD36CQ5JPF3 1778 aa11.95□□□□□ -0.5
CDK5RAP3-211ENST00000578996 SH3TC1Q8TE82 1336 aa11.95□□□□□ -0.5
CDK5RAP3-211ENST00000578996 ATP5J2-PTCD1G3V325 749 aa11.95□□□□□ -0.5
CDK5RAP3-211ENST00000578996 ELL2O00472 640 aaPredicted RBP11.95□□□□□ -0.5
CDK5RAP3-211ENST00000578996 PPIP5K2O43314 1243 aa11.95□□□□□ -0.5
CDK5RAP3-211ENST00000578996 HOXB7P09629 217 aa11.95□□□□□ -0.5
CDK5RAP3-211ENST00000578996 AOC3Q16853 763 aa11.95□□□□□ -0.5
CDK5RAP3-211ENST00000578996 GRIPAP1Q4V328 841 aa11.95□□□□□ -0.5
CDK5RAP3-211ENST00000578996 RTL5Q5HYW3 569 aaPredicted RBP11.95□□□□□ -0.5
CDK5RAP3-211ENST00000578996 SLC10A5Q5PT55 438 aa11.95□□□□□ -0.5
CDK5RAP3-211ENST00000578996 ANKRD13DQ6ZTN6 518 aa11.95□□□□□ -0.5
CDK5RAP3-211ENST00000578996 DDX46Q7L014 1031 aaKnown RBP11.95□□□□□ -0.5
CDK5RAP3-211ENST00000578996 NIM1KQ8IY84 436 aa11.95□□□□□ -0.5
CDK5RAP3-211ENST00000578996 GPC2Q8N158 579 aa11.95□□□□□ -0.5
CDK5RAP3-211ENST00000578996 JMYQ8N9B5 988 aa11.95□□□□□ -0.5
CDK5RAP3-211ENST00000578996 PLBD2Q8NHP8 589 aa11.95□□□□□ -0.5
CDK5RAP3-211ENST00000578996 LMOD1P29536 600 aaPredicted RBP11.94□□□□□ -0.5
CDK5RAP3-211ENST00000578996 CALD1Q05682 793 aaKnown RBP11.94□□□□□ -0.5
CDK5RAP3-211ENST00000578996 IFT57Q9NWB7 429 aa11.94□□□□□ -0.5
CDK5RAP3-211ENST00000578996 HYPKQ9NX55 129 aa11.94□□□□□ -0.5
CDK5RAP3-211ENST00000578996 MKRN1Q9UHC7 482 aaKnown RBP11.94□□□□□ -0.5
CDK5RAP3-211ENST00000578996 ATP6V0A2Q9Y487 856 aa11.94□□□□□ -0.5
CDK5RAP3-211ENST00000578996 COL4A5P29400 1685 aa11.94□□□□□ -0.5
CDK5RAP3-211ENST00000578996 SCN4AP35499 1836 aa11.93□□□□□ -0.5
CDK5RAP3-211ENST00000578996 GNAI1P63096 354 aa11.93□□□□□ -0.5
CDK5RAP3-211ENST00000578996 DPP8Q6V1X1 898 aaPredicted RBP11.93□□□□□ -0.5
CDK5RAP3-211ENST00000578996 RIC3Q7Z5B4 369 aa11.93□□□□□ -0.5
CDK5RAP3-211ENST00000578996 PNMA8AQ86V59 439 aaPredicted RBP11.93□□□□□ -0.5
CDK5RAP3-211ENST00000578996 FAM89AQ96GI7 184 aa11.93□□□□□ -0.5
CDK5RAP3-211ENST00000578996 CREBZFQ9NS37 354 aa11.93□□□□□ -0.5
CDK5RAP3-211ENST00000578996 BBOX1O75936 387 aa11.92□□□□□ -0.5
CDK5RAP3-211ENST00000578996 GOLGA2Q08379 1002 aa11.92□□□□□ -0.5
CDK5RAP3-211ENST00000578996 GRAPQ13588 217 aa11.92□□□□□ -0.5
CDK5RAP3-211ENST00000578996 MAP1SQ66K74 1059 aaPredicted RBP11.92□□□□□ -0.5
CDK5RAP3-211ENST00000578996 MPNDQ8N594 471 aa11.92□□□□□ -0.5
CDK5RAP3-211ENST00000578996 SUPT20HQ8NEM7 779 aa11.92□□□□□ -0.5
CDK5RAP3-211ENST00000578996 GRAPLQ8TC17 118 aaPredicted RBP11.92□□□□□ -0.5
CDK5RAP3-211ENST00000578996 ZNF853P0CG23 659 aa11.91□□□□□ -0.5
CDK5RAP3-211ENST00000578996 HSPA1AP0DMV8 641 aaKnown RBP11.91□□□□□ -0.5
CDK5RAP3-211ENST00000578996 HSPA1BP0DMV9 641 aaKnown RBP11.91□□□□□ -0.5
CDK5RAP3-211ENST00000578996 CCDC184Q52MB2 194 aa11.91□□□□□ -0.5
CDK5RAP3-211ENST00000578996 SP8Q8IXZ3 490 aa11.91□□□□□ -0.5
CDK5RAP3-211ENST00000578996 ISCA1Q9BUE6 129 aa11.91□□□□□ -0.5
CDK5RAP3-211ENST00000578996 PHAXQ9H814 394 aaKnown RBP11.91□□□□□ -0.5
CDK5RAP3-211ENST00000578996 LAMB2P55268 1798 aa11.91□□□□□ -0.5
CDK5RAP3-211ENST00000578996 PASKQ96RG2 1323 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms