RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 POTEIP0CG38 1075 aa23.7■■□□□ 1.38
CHD3-214ENST00000572579 POTEJP0CG39 1038 aa23.7■■□□□ 1.38
CHD3-214ENST00000572579 SLC10A5Q5PT55 438 aa23.7■■□□□ 1.38
CHD3-214ENST00000572579 DDX21Q9NR30 783 aaKnown RBP eCLIP23.7■■□□□ 1.38
CHD3-214ENST00000572579 APAF1O14727 1248 aa23.69■■□□□ 1.38
CHD3-214ENST00000572579 ZNF853P0CG23 659 aa23.69■■□□□ 1.38
CHD3-214ENST00000572579 RTKN2Q8IZC4 609 aa23.69■■□□□ 1.38
CHD3-214ENST00000572579 CHPF2Q9P2E5 772 aa23.69■■□□□ 1.38
CHD3-214ENST00000572579 TIAM2Q8IVF5 1701 aa23.69■■□□□ 1.38
CHD3-214ENST00000572579 RIC1Q4ADV7 1423 aa23.68■■□□□ 1.38
CHD3-214ENST00000572579 ARFGEF2Q9Y6D5 1785 aa23.68■■□□□ 1.38
CHD3-214ENST00000572579 ZNF541Q9H0D2 1346 aa23.68■■□□□ 1.38
CHD3-214ENST00000572579 PARP10Q53GL7 1025 aa23.68■■□□□ 1.38
CHD3-214ENST00000572579 NLRP10Q86W26 655 aa23.68■■□□□ 1.38
CHD3-214ENST00000572579 ZNF428Q96B54 188 aa23.68■■□□□ 1.38
CHD3-214ENST00000572579 CFAP44Q96MT7 982 aa23.68■■□□□ 1.38
CHD3-214ENST00000572579 UTP14AQ9BVJ6 771 aaKnown RBP23.68■■□□□ 1.38
CHD3-214ENST00000572579 MBIPQ9NS73 344 aa23.68■■□□□ 1.38
CHD3-214ENST00000572579 WDR90Q96KV7 1748 aa23.67■■□□□ 1.38
CHD3-214ENST00000572579 CRAMP1Q96RY5 1269 aa23.67■■□□□ 1.38
CHD3-214ENST00000572579 TCIRG1Q13488 830 aa23.66■■□□□ 1.38
CHD3-214ENST00000572579 PPP1R42Q7Z4L9 355 aa23.66■■□□□ 1.38
CHD3-214ENST00000572579 PCNTO95613 3336 aa23.66■■□□□ 1.38
CHD3-214ENST00000572579 CACNA1SQ13698 1873 aa23.65■■□□□ 1.38
CHD3-214ENST00000572579 FZD9O00144 591 aa23.65■■□□□ 1.38
CHD3-214ENST00000572579 IARSP41252 1262 aaKnown RBP23.65■■□□□ 1.38
CHD3-214ENST00000572579 DUSP27Q5VZP5 1158 aa23.65■■□□□ 1.38
CHD3-214ENST00000572579 RPGRQ92834 1020 aaKnown RBP23.65■■□□□ 1.38
CHD3-214ENST00000572579 L3MBTL3Q96JM7 780 aaPredicted RBP23.65■■□□□ 1.38
CHD3-214ENST00000572579 PSMD1Q99460 953 aa23.65■■□□□ 1.38
CHD3-214ENST00000572579 TCERG1O14776 1098 aaKnown RBP23.64■■□□□ 1.37
CHD3-214ENST00000572579 HCLS1P14317 486 aaPredicted RBP23.64■■□□□ 1.37
CHD3-214ENST00000572579 HDGFL1Q5TGJ6 251 aa23.64■■□□□ 1.37
CHD3-214ENST00000572579 KLRG1Q96E93 195 aa23.64■■□□□ 1.37
CHD3-214ENST00000572579 DICER1Q9UPY3 1922 aaKnown RBP23.64■■□□□ 1.37
CHD3-214ENST00000572579 COL4A5P29400 1685 aa23.64■■□□□ 1.37
CHD3-214ENST00000572579 RBM17Q96I25 401 aaKnown RBP23.63■■□□□ 1.37
CHD3-214ENST00000572579 NLRP3Q96P20 1036 aa23.63■■□□□ 1.37
CHD3-214ENST00000572579 HOXB7P09629 217 aa23.62■■□□□ 1.37
CHD3-214ENST00000572579 CC2D2BQ6DHV5 1058 aa23.61■■□□□ 1.37
CHD3-214ENST00000572579 TAF1DQ9H5J8 278 aaPredicted RBP23.61■■□□□ 1.37
CHD3-214ENST00000572579 PPEF1O14829 653 aaPredicted RBP23.6■■□□□ 1.37
CHD3-214ENST00000572579 HSP90AB3PQ58FF7 597 aa23.6■■□□□ 1.37
CHD3-214ENST00000572579 JMYQ8N9B5 988 aa23.6■■□□□ 1.37
CHD3-214ENST00000572579 PLBD2Q8NHP8 589 aa23.6■■□□□ 1.37
CHD3-214ENST00000572579 ISCA1Q9BUE6 129 aa23.6■■□□□ 1.37
CHD3-214ENST00000572579 ABCC4O15439 1325 aa23.59■■□□□ 1.37
CHD3-214ENST00000572579 CHADLQ6NUI6 762 aa23.59■■□□□ 1.37
CHD3-214ENST00000572579 ANKRD13DQ6ZTN6 518 aa23.59■■□□□ 1.37
CHD3-214ENST00000572579 C8orf58Q8NAV2 365 aa23.59■■□□□ 1.37
CHD3-214ENST00000572579 IFT57Q9NWB7 429 aa23.59■■□□□ 1.37
CHD3-214ENST00000572579 DBF4Q9UBU7 674 aaPredicted RBP23.59■■□□□ 1.37
CHD3-214ENST00000572579 TRMT112Q9UI30 125 aaKnown RBP23.59■■□□□ 1.37
CHD3-214ENST00000572579 ATP5J2-PTCD1G3V325 749 aa23.58■■□□□ 1.37
CHD3-214ENST00000572579 ELL2O00472 640 aaPredicted RBP23.58■■□□□ 1.37
CHD3-214ENST00000572579 ATP6V0A2Q9Y487 856 aa23.58■■□□□ 1.37
CHD3-214ENST00000572579 PHAXQ9H814 394 aaKnown RBP23.56■■□□□ 1.36
CHD3-214ENST00000572579 RNF123Q5XPI4 1314 aa23.56■■□□□ 1.36
CHD3-214ENST00000572579 SH3TC1Q8TE82 1336 aa23.56■■□□□ 1.36
CHD3-214ENST00000572579 FAM89AQ96GI7 184 aa23.55■■□□□ 1.36
CHD3-214ENST00000572579 HYPKQ9NX55 129 aa23.55■■□□□ 1.36
CHD3-214ENST00000572579 IQCA1LA6NCM1 817 aa23.54■■□□□ 1.36
CHD3-214ENST00000572579 TSPYL6Q8N831 410 aa23.54■■□□□ 1.36
CHD3-214ENST00000572579 BBOX1O75936 387 aa23.53■■□□□ 1.36
CHD3-214ENST00000572579 ITGBL1O95965 494 aaPredicted RBP23.53■■□□□ 1.36
CHD3-214ENST00000572579 GNAI1P63096 354 aa23.53■■□□□ 1.36
CHD3-214ENST00000572579 GRIPAP1Q4V328 841 aa23.53■■□□□ 1.36
CHD3-214ENST00000572579 LDHDQ86WU2 507 aa23.53■■□□□ 1.36
CHD3-214ENST00000572579 GPC2Q8N158 579 aa23.53■■□□□ 1.36
CHD3-214ENST00000572579 JDP2Q8WYK2 163 aa23.53■■□□□ 1.36
CHD3-214ENST00000572579 RTFDC1Q9BY42 306 aaPredicted RBP23.53■■□□□ 1.36
CHD3-214ENST00000572579 HACL1Q9UJ83 578 aa23.53■■□□□ 1.36
CHD3-214ENST00000572579 PASKQ96RG2 1323 aa23.53■■□□□ 1.36
CHD3-214ENST00000572579 EPHX2P34913 555 aa23.52■■□□□ 1.36
CHD3-214ENST00000572579 TRIM28Q13263 835 aaKnown RBP23.52■■□□□ 1.36
CHD3-214ENST00000572579 SP8Q8IXZ3 490 aa23.52■■□□□ 1.36
CHD3-214ENST00000572579 LARGE2Q8N3Y3 721 aa23.52■■□□□ 1.36
CHD3-214ENST00000572579 AOC3Q16853 763 aa23.51■■□□□ 1.35
CHD3-214ENST00000572579 RTL5Q5HYW3 569 aaPredicted RBP23.51■■□□□ 1.35
CHD3-214ENST00000572579 SCNN1DP51172 638 aa23.5■■□□□ 1.35
CHD3-214ENST00000572579 GRAPQ13588 217 aa23.5■■□□□ 1.35
CHD3-214ENST00000572579 EAPPQ56P03 285 aaPredicted RBP23.5■■□□□ 1.35
CHD3-214ENST00000572579 IFFO2Q5TF58 517 aa23.5■■□□□ 1.35
CHD3-214ENST00000572579 GRAPLQ8TC17 118 aaPredicted RBP23.5■■□□□ 1.35
CHD3-214ENST00000572579 GJA3Q9Y6H8 435 aa23.5■■□□□ 1.35
CHD3-214ENST00000572579 EPS15P42566 896 aa23.49■■□□□ 1.35
CHD3-214ENST00000572579 SF3B3Q15393 1217 aaKnown RBP23.49■■□□□ 1.35
CHD3-214ENST00000572579 DDX46Q7L014 1031 aaKnown RBP23.49■■□□□ 1.35
CHD3-214ENST00000572579 CELF1Q92879 486 aaKnown RBP23.49■■□□□ 1.35
CHD3-214ENST00000572579 TSR2Q969E8 191 aaKnown RBP23.49■■□□□ 1.35
CHD3-214ENST00000572579 COL4A1P02462 1669 aa23.48■■□□□ 1.35
CHD3-214ENST00000572579 PPIP5K2O43314 1243 aa23.48■■□□□ 1.35
CHD3-214ENST00000572579 EIF6P56537 245 aaKnown RBP23.48■■□□□ 1.35
CHD3-214ENST00000572579 CALD1Q05682 793 aaKnown RBP23.48■■□□□ 1.35
CHD3-214ENST00000572579 MAP1SQ66K74 1059 aaPredicted RBP23.47■■□□□ 1.35
CHD3-214ENST00000572579 WWC1Q8IX03 1113 aa23.47■■□□□ 1.35
CHD3-214ENST00000572579 CREBZFQ9NS37 354 aa23.47■■□□□ 1.35
CHD3-214ENST00000572579 CXCL9Q07325 125 aa23.46■■□□□ 1.35
CHD3-214ENST00000572579 ANKRD36CQ5JPF3 1778 aa23.46■■□□□ 1.35
CHD3-214ENST00000572579 DPP8Q6V1X1 898 aaPredicted RBP23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms