RNA–Protein interactions for RNA: ENST00000569827.5

CAPN3-220, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 908 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-220ENST00000569827 TMEM88BA6NKF7 163 aa16.01■□□□□ 0.15
CAPN3-220ENST00000569827 FZD9O00144 591 aa16.01■□□□□ 0.15
CAPN3-220ENST00000569827 EIF4A1P60842 406 aaKnown RBP16.01■□□□□ 0.15
CAPN3-220ENST00000569827 KIF6Q6ZMV9 814 aa16.01■□□□□ 0.15
CAPN3-220ENST00000569827 ANXA1P04083 346 aa16■□□□□ 0.15
CAPN3-220ENST00000569827 ALDH1B1P30837 517 aa16■□□□□ 0.15
CAPN3-220ENST00000569827 CRY2Q49AN0 593 aa16■□□□□ 0.15
CAPN3-220ENST00000569827 SUSD4Q5VX71 490 aa16■□□□□ 0.15
CAPN3-220ENST00000569827 CNTROBQ8N137 903 aa16■□□□□ 0.15
CAPN3-220ENST00000569827 RPGRQ92834 1020 aaKnown RBP16■□□□□ 0.15
CAPN3-220ENST00000569827 ZNF428Q96B54 188 aa16■□□□□ 0.15
CAPN3-220ENST00000569827 POLR2AP24928 1970 aaKnown RBP16■□□□□ 0.15
CAPN3-220ENST00000569827 PLEKHF1Q96S99 279 aa15.99■□□□□ 0.15
CAPN3-220ENST00000569827 NYXQ9GZU5 481 aa15.99■□□□□ 0.15
CAPN3-220ENST00000569827 NFE2L2Q16236 605 aa15.98■□□□□ 0.15
CAPN3-220ENST00000569827 RIC1Q4ADV7 1423 aa15.98■□□□□ 0.15
CAPN3-220ENST00000569827 JDP2Q8WYK2 163 aa15.98■□□□□ 0.15
CAPN3-220ENST00000569827 DDX60Q8IY21 1712 aaKnown RBP15.97■□□□□ 0.15
CAPN3-220ENST00000569827 ERVV-1B6SEH8 477 aa15.97■□□□□ 0.15
CAPN3-220ENST00000569827 PPEF1O14829 653 aaPredicted RBP15.97■□□□□ 0.15
CAPN3-220ENST00000569827 RGL2O15211 777 aa15.97■□□□□ 0.15
CAPN3-220ENST00000569827 NTSR2O95665 410 aa15.97■□□□□ 0.15
CAPN3-220ENST00000569827 EPS15P42566 896 aa15.97■□□□□ 0.15
CAPN3-220ENST00000569827 PROSER3Q2NL68 480 aa15.97■□□□□ 0.15
CAPN3-220ENST00000569827 GPC2Q8N158 579 aa15.97■□□□□ 0.15
CAPN3-220ENST00000569827 LARGE2Q8N3Y3 721 aa15.97■□□□□ 0.15
CAPN3-220ENST00000569827 PSMD1Q99460 953 aa15.97■□□□□ 0.15
CAPN3-220ENST00000569827 THSD7BQ9C0I4 1608 aa15.97■□□□□ 0.15
CAPN3-220ENST00000569827 CASP8AP2Q9UKL3 1982 aa15.96■□□□□ 0.15
CAPN3-220ENST00000569827 NEFMP07197 916 aa15.96■□□□□ 0.15
CAPN3-220ENST00000569827 EIF2S2P20042 333 aaKnown RBP15.96■□□□□ 0.15
CAPN3-220ENST00000569827 SCNN1DP51172 638 aa15.96■□□□□ 0.15
CAPN3-220ENST00000569827 LBX1P52954 281 aa15.96■□□□□ 0.15
CAPN3-220ENST00000569827 EIF6P56537 245 aaKnown RBP15.96■□□□□ 0.15
CAPN3-220ENST00000569827 GRM1Q13255 1194 aa15.96■□□□□ 0.15
CAPN3-220ENST00000569827 NECTIN2Q92692 538 aa15.96■□□□□ 0.15
CAPN3-220ENST00000569827 AIDAQ96BJ3 306 aa15.96■□□□□ 0.15
CAPN3-220ENST00000569827 ABT1Q9ULW3 272 aaKnown RBP15.96■□□□□ 0.15
CAPN3-220ENST00000569827 TRAF5O00463 557 aa15.95■□□□□ 0.14
CAPN3-220ENST00000569827 AOC3Q16853 763 aa15.95■□□□□ 0.14
CAPN3-220ENST00000569827 PNMA8AQ86V59 439 aaPredicted RBP15.95■□□□□ 0.14
CAPN3-220ENST00000569827 ZNF34Q8IZ26 560 aa15.95■□□□□ 0.14
CAPN3-220ENST00000569827 PNISRQ8TF01 805 aaKnown RBP15.95■□□□□ 0.14
CAPN3-220ENST00000569827 TSPYL4Q9UJ04 414 aa15.95■□□□□ 0.14
CAPN3-220ENST00000569827 IBTKQ9P2D0 1353 aaPredicted RBP15.95■□□□□ 0.14
CAPN3-220ENST00000569827 MAPK8IP3Q9UPT6 1336 aa15.94■□□□□ 0.14
CAPN3-220ENST00000569827 LMOD1P29536 600 aaPredicted RBP15.94■□□□□ 0.14
CAPN3-220ENST00000569827 HOXA10P31260 410 aaPredicted RBP15.94■□□□□ 0.14
CAPN3-220ENST00000569827 CTCFP49711 727 aaPredicted RBP15.94■□□□□ 0.14
CAPN3-220ENST00000569827 PAXIP1Q6ZW49 1069 aaPredicted RBP15.94■□□□□ 0.14
CAPN3-220ENST00000569827 RBM17Q96I25 401 aaKnown RBP15.94■□□□□ 0.14
CAPN3-220ENST00000569827 COL4A1P02462 1669 aa15.94■□□□□ 0.14
CAPN3-220ENST00000569827 RASSF10A6NK89 507 aa15.93■□□□□ 0.14
CAPN3-220ENST00000569827 PPIP5K2O43314 1243 aa15.93■□□□□ 0.14
CAPN3-220ENST00000569827 DEFB115Q30KQ5 88 aa15.93■□□□□ 0.14
CAPN3-220ENST00000569827 GIGYF2Q6Y7W6 1299 aaKnown RBP15.93■□□□□ 0.14
CAPN3-220ENST00000569827 DDX21Q9NR30 783 aaKnown RBP eCLIP15.93■□□□□ 0.14
CAPN3-220ENST00000569827 WBP1LQ9NX94 342 aa15.93■□□□□ 0.14
CAPN3-220ENST00000569827 ABCC4O15439 1325 aa15.93■□□□□ 0.14
CAPN3-220ENST00000569827 WDR33Q9C0J8 1336 aaKnown RBP15.93■□□□□ 0.14
CAPN3-220ENST00000569827 HSPA8P11142 646 aaKnown RBP15.92■□□□□ 0.14
CAPN3-220ENST00000569827 PDIA6Q15084 440 aa15.92■□□□□ 0.14
CAPN3-220ENST00000569827 LRP10Q7Z4F1 713 aa15.92■□□□□ 0.14
CAPN3-220ENST00000569827 NIM1KQ8IY84 436 aa15.92■□□□□ 0.14
CAPN3-220ENST00000569827 CRAMP1Q96RY5 1269 aa15.92■□□□□ 0.14
CAPN3-220ENST00000569827 PRDM10Q9NQV6 1147 aa15.92■□□□□ 0.14
CAPN3-220ENST00000569827 DUOX1Q9NRD9 1551 aa15.92■□□□□ 0.14
CAPN3-220ENST00000569827 LRRC37AA6NMS7 1700 aa15.91■□□□□ 0.14
CAPN3-220ENST00000569827 HCLS1P14317 486 aaPredicted RBP15.91■□□□□ 0.14
CAPN3-220ENST00000569827 AIMP1Q12904 312 aaKnown RBP15.91■□□□□ 0.14
CAPN3-220ENST00000569827 KRT24Q2M2I5 525 aa15.91■□□□□ 0.14
CAPN3-220ENST00000569827 CC2D2BQ6DHV5 1058 aa15.91■□□□□ 0.14
CAPN3-220ENST00000569827 CYP4F22Q6NT55 531 aa15.91■□□□□ 0.14
CAPN3-220ENST00000569827 TSKSQ9UJT2 592 aa15.91■□□□□ 0.14
CAPN3-220ENST00000569827 PPP1R42Q7Z4L9 355 aa15.9■□□□□ 0.14
CAPN3-220ENST00000569827 SHTN1A0MZ66 631 aa15.89■□□□□ 0.13
CAPN3-220ENST00000569827 RIPK4P57078 832 aa15.89■□□□□ 0.13
CAPN3-220ENST00000569827 CST9Q5W186 159 aa15.89■□□□□ 0.13
CAPN3-220ENST00000569827 CAPNS2Q96L46 248 aa15.89■□□□□ 0.13
CAPN3-220ENST00000569827 NLRP3Q96P20 1036 aa15.89■□□□□ 0.13
CAPN3-220ENST00000569827 UTP14AQ9BVJ6 771 aaKnown RBP15.89■□□□□ 0.13
CAPN3-220ENST00000569827 ATP6V0A2Q9Y487 856 aa15.89■□□□□ 0.13
CAPN3-220ENST00000569827 SCN9AQ15858 1988 aa15.89■□□□□ 0.13
CAPN3-220ENST00000569827 GMPSP49915 693 aaPredicted RBP15.88■□□□□ 0.13
CAPN3-220ENST00000569827 CXCL9Q07325 125 aa15.88■□□□□ 0.13
CAPN3-220ENST00000569827 NEUROD2Q15784 382 aa15.88■□□□□ 0.13
CAPN3-220ENST00000569827 PARP10Q53GL7 1025 aa15.88■□□□□ 0.13
CAPN3-220ENST00000569827 CCDC146Q8IYE0 955 aa15.88■□□□□ 0.13
CAPN3-220ENST00000569827 XAGE3Q8WTP9 111 aa15.88■□□□□ 0.13
CAPN3-220ENST00000569827 ERBB4Q15303 1308 aa15.88■□□□□ 0.13
CAPN3-220ENST00000569827 SPEF2Q9C093 1822 aa15.87■□□□□ 0.13
CAPN3-220ENST00000569827 AOC2O75106 756 aa15.87■□□□□ 0.13
CAPN3-220ENST00000569827 RAD17O75943 681 aa15.87■□□□□ 0.13
CAPN3-220ENST00000569827 COPS6Q7L5N1 327 aa15.87■□□□□ 0.13
CAPN3-220ENST00000569827 GLIS2Q9BZE0 524 aaPredicted RBP15.87■□□□□ 0.13
CAPN3-220ENST00000569827 GPRC5DQ9NZD1 345 aa15.87■□□□□ 0.13
CAPN3-220ENST00000569827 DLK2Q6UY11 383 aa15.86■□□□□ 0.13
CAPN3-220ENST00000569827 USP50Q70EL3 339 aaPredicted RBP15.86■□□□□ 0.13
CAPN3-220ENST00000569827 NLRP10Q86W26 655 aa15.86■□□□□ 0.13
CAPN3-220ENST00000569827 TMPOP42166 694 aaKnown RBP15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms