RNA–Protein interactions for RNA: ENST00000569066.2

UBR1-208, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 1 (best)

Gene UBR1, Length 2,250 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-208ENST00000569066 CMTR1Q8N1G2 835 aaKnown RBP9.3□□□□□ -0.92
UBR1-208ENST00000569066 CSRNP1Q96S65 589 aa9.3□□□□□ -0.92
UBR1-208ENST00000569066 RTCBQ9Y3I0 505 aaKnown RBP9.3□□□□□ -0.92
UBR1-208ENST00000569066 KCNMB2Q9Y691 235 aa9.3□□□□□ -0.92
UBR1-208ENST00000569066 ATP2B2Q01814 1243 aa9.3□□□□□ -0.92
UBR1-208ENST00000569066 ZFP42Q96MM3 310 aa9.3□□□□□ -0.92
UBR1-208ENST00000569066 MRS2Q9HD23 443 aa9.3□□□□□ -0.92
UBR1-208ENST00000569066 USP35Q9P2H5 1018 aa9.3□□□□□ -0.92
UBR1-208ENST00000569066 DNMT3LQ9UJW3 386 aa9.3□□□□□ -0.92
UBR1-208ENST00000569066 PSMD2Q13200 908 aa9.29□□□□□ -0.92
UBR1-208ENST00000569066 PIK3R5Q8WYR1 880 aa9.29□□□□□ -0.92
UBR1-208ENST00000569066 SOS2Q07890 1332 aaPredicted RBP9.29□□□□□ -0.92
UBR1-208ENST00000569066 A0A1W2PNR3 127 aa9.29□□□□□ -0.92
UBR1-208ENST00000569066 SORBS3O60504 671 aa9.29□□□□□ -0.92
UBR1-208ENST00000569066 HDLBPQ00341 1268 aaKnown RBP9.29□□□□□ -0.92
UBR1-208ENST00000569066 TYRO3Q06418 890 aa9.29□□□□□ -0.92
UBR1-208ENST00000569066 IER5Q5VY09 327 aa9.29□□□□□ -0.92
UBR1-208ENST00000569066 TMEM63CQ9P1W3 806 aa9.29□□□□□ -0.92
UBR1-208ENST00000569066 VTI1BQ9UEU0 232 aa9.29□□□□□ -0.92
UBR1-208ENST00000569066 A0A1B0GTH6 734 aa9.28□□□□□ -0.92
UBR1-208ENST00000569066 TNFRSF21O75509 655 aa9.28□□□□□ -0.92
UBR1-208ENST00000569066 PCSK2P16519 638 aa9.28□□□□□ -0.92
UBR1-208ENST00000569066 ARSDP51689 593 aa9.28□□□□□ -0.92
UBR1-208ENST00000569066 TMEM87AQ8NBN3 555 aa9.28□□□□□ -0.92
UBR1-208ENST00000569066 SOBPA7XYQ1 873 aa9.27□□□□□ -0.93
UBR1-208ENST00000569066 ZCCHC2Q9C0B9 1178 aaKnown RBP9.27□□□□□ -0.93
UBR1-208ENST00000569066 EPS8L3Q8TE67 593 aaKnown RBP9.26□□□□□ -0.93
UBR1-208ENST00000569066 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.26□□□□□ -0.93
UBR1-208ENST00000569066 SENP3-EIF4A1A0A087X0R7 540 aa9.26□□□□□ -0.93
UBR1-208ENST00000569066 UBAP1LF5GYI3 381 aa9.26□□□□□ -0.93
UBR1-208ENST00000569066 CTSHP09668 335 aa9.26□□□□□ -0.93
UBR1-208ENST00000569066 GNA15P30679 374 aa9.26□□□□□ -0.93
UBR1-208ENST00000569066 ZNF438Q7Z4V0 828 aa9.26□□□□□ -0.93
UBR1-208ENST00000569066 TTC16Q8NEE8 873 aa9.26□□□□□ -0.93
UBR1-208ENST00000569066 GAS2L1Q99501 681 aaPredicted RBP9.26□□□□□ -0.93
UBR1-208ENST00000569066 AVPP01185 164 aa9.25□□□□□ -0.93
UBR1-208ENST00000569066 HIF1AQ16665 826 aa9.25□□□□□ -0.93
UBR1-208ENST00000569066 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.25□□□□□ -0.93
UBR1-208ENST00000569066 ALG1LQ6GMV1 187 aa9.25□□□□□ -0.93
UBR1-208ENST00000569066 CEP63Q96MT8 703 aa9.25□□□□□ -0.93
UBR1-208ENST00000569066 POLR3DP05423 398 aaPredicted RBP9.25□□□□□ -0.93
UBR1-208ENST00000569066 THBS1P07996 1170 aa9.25□□□□□ -0.93
UBR1-208ENST00000569066 NEUROD4Q9HD90 331 aa9.25□□□□□ -0.93
UBR1-208ENST00000569066 SCAMP3O14828 347 aaKnown RBP9.24□□□□□ -0.93
UBR1-208ENST00000569066 SCARF1Q14162 830 aa9.24□□□□□ -0.93
UBR1-208ENST00000569066 WDR44Q5JSH3 913 aa9.24□□□□□ -0.93
UBR1-208ENST00000569066 FAM13BQ9NYF5 915 aa9.24□□□□□ -0.93
UBR1-208ENST00000569066 CPNE3O75131 537 aaKnown RBP9.24□□□□□ -0.93
UBR1-208ENST00000569066 FANCCQ00597 558 aa9.24□□□□□ -0.93
UBR1-208ENST00000569066 METTL16Q86W50 562 aaKnown RBP9.24□□□□□ -0.93
UBR1-208ENST00000569066 ELP3Q9H9T3 547 aa9.24□□□□□ -0.93
UBR1-208ENST00000569066 ANKIB1Q9P2G1 1089 aa9.24□□□□□ -0.93
UBR1-208ENST00000569066 ERCC5P28715 1186 aaPredicted RBP9.23□□□□□ -0.93
UBR1-208ENST00000569066 GRIN2CQ14957 1233 aa9.23□□□□□ -0.93
UBR1-208ENST00000569066 OSBPL7Q9BZF2 842 aa9.23□□□□□ -0.93
UBR1-208ENST00000569066 NPHS2Q9NP85 383 aa9.23□□□□□ -0.93
UBR1-208ENST00000569066 BRD7Q9NPI1 651 aa9.23□□□□□ -0.93
UBR1-208ENST00000569066 HCN2Q9UL51 889 aa9.23□□□□□ -0.93
UBR1-208ENST00000569066 GPC6Q9Y625 555 aaPredicted RBP9.23□□□□□ -0.93
UBR1-208ENST00000569066 ST8SIA5O15466 376 aa9.22□□□□□ -0.93
UBR1-208ENST00000569066 XYLBO75191 536 aa9.22□□□□□ -0.93
UBR1-208ENST00000569066 RAD51AP2Q09MP3 1159 aa9.22□□□□□ -0.93
UBR1-208ENST00000569066 NT5DC4Q86YG4 428 aa9.22□□□□□ -0.93
UBR1-208ENST00000569066 CCDC74AQ96AQ1 378 aa9.22□□□□□ -0.93
UBR1-208ENST00000569066 CHRDQ9H2X0 955 aa9.22□□□□□ -0.93
UBR1-208ENST00000569066 CNTN3Q9P232 1028 aa9.22□□□□□ -0.93
UBR1-208ENST00000569066 GJA3Q9Y6H8 435 aa9.22□□□□□ -0.93
UBR1-208ENST00000569066 DACH1Q9UI36 760 aa9.22□□□□□ -0.93
UBR1-208ENST00000569066 EREGO14944 169 aa9.21□□□□□ -0.93
UBR1-208ENST00000569066 C1orf127Q8N9H9 656 aa9.21□□□□□ -0.93
UBR1-208ENST00000569066 SNX29Q8TEQ0 813 aa9.21□□□□□ -0.93
UBR1-208ENST00000569066 CRISPLD1Q9H336 500 aa9.21□□□□□ -0.93
UBR1-208ENST00000569066 PDE12Q6L8Q7 609 aaKnown RBP9.21□□□□□ -0.94
UBR1-208ENST00000569066 FBF1Q8TES7 1133 aa9.21□□□□□ -0.94
UBR1-208ENST00000569066 BCL11AQ9H165 835 aa9.21□□□□□ -0.94
UBR1-208ENST00000569066 KRT25Q7Z3Z0 450 aa9.2□□□□□ -0.94
UBR1-208ENST00000569066 DNAJC25Q9H1X3 360 aa9.2□□□□□ -0.94
UBR1-208ENST00000569066 DYRK1BQ9Y463 629 aa9.2□□□□□ -0.94
UBR1-208ENST00000569066 DCDC2BA2VCK2 349 aa9.2□□□□□ -0.94
UBR1-208ENST00000569066 PHACTR2O75167 634 aa9.2□□□□□ -0.94
UBR1-208ENST00000569066 XKR5Q6UX68 686 aa9.2□□□□□ -0.94
UBR1-208ENST00000569066 AXIN1O15169 862 aa9.19□□□□□ -0.94
UBR1-208ENST00000569066 F11P03951 625 aa9.19□□□□□ -0.94
UBR1-208ENST00000569066 CYP2E1P05181 493 aaPredicted RBP9.19□□□□□ -0.94
UBR1-208ENST00000569066 RPLP1P05386 114 aaKnown RBP9.19□□□□□ -0.94
UBR1-208ENST00000569066 MEI1Q5TIA1 1274 aa9.19□□□□□ -0.94
UBR1-208ENST00000569066 ZFYVE28Q9HCC9 887 aa9.19□□□□□ -0.94
UBR1-208ENST00000569066 KANSL3Q9P2N6 904 aa9.19□□□□□ -0.94
UBR1-208ENST00000569066 AK5Q9Y6K8 562 aa9.19□□□□□ -0.94
UBR1-208ENST00000569066 PKDCCQ504Y2 493 aa9.19□□□□□ -0.94
UBR1-208ENST00000569066 NAALADL2Q58DX5 795 aa9.19□□□□□ -0.94
UBR1-208ENST00000569066 LATS2Q9NRM7 1088 aa9.19□□□□□ -0.94
UBR1-208ENST00000569066 FNDC3AQ9Y2H6 1198 aaKnown RBP9.19□□□□□ -0.94
UBR1-208ENST00000569066 ZC3H6P61129 1189 aaKnown RBP9.18□□□□□ -0.94
UBR1-208ENST00000569066 FGD1P98174 961 aa9.18□□□□□ -0.94
UBR1-208ENST00000569066 SFSWAPQ12872 951 aaKnown RBP9.18□□□□□ -0.94
UBR1-208ENST00000569066 CRELD1Q96HD1 420 aa9.18□□□□□ -0.94
UBR1-208ENST00000569066 MAN1A2O60476 641 aa9.17□□□□□ -0.94
UBR1-208ENST00000569066 SASH3O75995 380 aa9.17□□□□□ -0.94
UBR1-208ENST00000569066 TARSP26639 723 aaKnown RBP9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms