RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 SYNE4Q8N205 404 aa21.04■□□□□ 0.96
CLN3-229ENST00000567963 IFFO2Q5TF58 517 aa21.03■□□□□ 0.96
CLN3-229ENST00000567963 COPS6Q7L5N1 327 aa21.03■□□□□ 0.96
CLN3-229ENST00000567963 NECTIN2Q92692 538 aa21.03■□□□□ 0.96
CLN3-229ENST00000567963 PRKRIP1Q9H875 184 aaPredicted RBP21.03■□□□□ 0.96
CLN3-229ENST00000567963 CC2D2BQ6DHV5 1058 aa21.02■□□□□ 0.96
CLN3-229ENST00000567963 JMYQ8N9B5 988 aa21.02■□□□□ 0.96
CLN3-229ENST00000567963 L3MBTL3Q96JM7 780 aaPredicted RBP21.02■□□□□ 0.96
CLN3-229ENST00000567963 PSMD1Q99460 953 aa21.02■□□□□ 0.96
CLN3-229ENST00000567963 LAS1LQ9Y4W2 734 aaKnown RBP21.02■□□□□ 0.96
CLN3-229ENST00000567963 SNED1Q8TER0 1413 aa21.02■□□□□ 0.96
CLN3-229ENST00000567963 IQCA1LA6NCM1 817 aa21.01■□□□□ 0.95
CLN3-229ENST00000567963 IARSP41252 1262 aaKnown RBP21.01■□□□□ 0.95
CLN3-229ENST00000567963 KRT24Q2M2I5 525 aa21.01■□□□□ 0.95
CLN3-229ENST00000567963 RBM17Q96I25 401 aaKnown RBP21.01■□□□□ 0.95
CLN3-229ENST00000567963 CRAMP1Q96RY5 1269 aa21.01■□□□□ 0.95
CLN3-229ENST00000567963 UTP14AQ9BVJ6 771 aaKnown RBP21.01■□□□□ 0.95
CLN3-229ENST00000567963 AIMP1Q12904 312 aaKnown RBP21.01■□□□□ 0.95
CLN3-229ENST00000567963 SLC10A5Q5PT55 438 aa21.01■□□□□ 0.95
CLN3-229ENST00000567963 C3orf67Q6ZVT6 689 aa21.01■□□□□ 0.95
CLN3-229ENST00000567963 XAGE3Q8WTP9 111 aa21.01■□□□□ 0.95
CLN3-229ENST00000567963 NLRP3Q96P20 1036 aa21.01■□□□□ 0.95
CLN3-229ENST00000567963 DDX21Q9NR30 783 aaKnown RBP eCLIP21.01■□□□□ 0.95
CLN3-229ENST00000567963 SCN4AP35499 1836 aa21■□□□□ 0.95
CLN3-229ENST00000567963 FZD9O00144 591 aa21■□□□□ 0.95
CLN3-229ENST00000567963 POTEIP0CG38 1075 aa21■□□□□ 0.95
CLN3-229ENST00000567963 POTEJP0CG39 1038 aa21■□□□□ 0.95
CLN3-229ENST00000567963 CHADLQ6NUI6 762 aa21■□□□□ 0.95
CLN3-229ENST00000567963 ZNF541Q9H0D2 1346 aa20.99■□□□□ 0.95
CLN3-229ENST00000567963 GRIPAP1Q4V328 841 aa20.99■□□□□ 0.95
CLN3-229ENST00000567963 HSP90AB3PQ58FF7 597 aa20.99■□□□□ 0.95
CLN3-229ENST00000567963 CFAP44Q96MT7 982 aa20.98■□□□□ 0.95
CLN3-229ENST00000567963 TAF1DQ9H5J8 278 aaPredicted RBP20.98■□□□□ 0.95
CLN3-229ENST00000567963 TCIRG1Q13488 830 aa20.97■□□□□ 0.95
CLN3-229ENST00000567963 NLRP10Q86W26 655 aa20.97■□□□□ 0.95
CLN3-229ENST00000567963 JDP2Q8WYK2 163 aa20.97■□□□□ 0.95
CLN3-229ENST00000567963 RNF123Q5XPI4 1314 aa20.97■□□□□ 0.95
CLN3-229ENST00000567963 ANKRD36CQ5JPF3 1778 aa20.97■□□□□ 0.95
CLN3-229ENST00000567963 PPEF1O14829 653 aaPredicted RBP20.96■□□□□ 0.95
CLN3-229ENST00000567963 HOXB7P09629 217 aa20.96■□□□□ 0.95
CLN3-229ENST00000567963 CHPF2Q9P2E5 772 aa20.96■□□□□ 0.95
CLN3-229ENST00000567963 TCERG1O14776 1098 aaKnown RBP20.95■□□□□ 0.94
CLN3-229ENST00000567963 HDGFL1Q5TGJ6 251 aa20.95■□□□□ 0.94
CLN3-229ENST00000567963 SLC51AQ86UW1 340 aa20.95■□□□□ 0.94
CLN3-229ENST00000567963 LDHDQ86WU2 507 aa20.95■□□□□ 0.94
CLN3-229ENST00000567963 GPC2Q8N158 579 aa20.94■□□□□ 0.94
CLN3-229ENST00000567963 HACL1Q9UJ83 578 aa20.94■□□□□ 0.94
CLN3-229ENST00000567963 DBF4Q9UBU7 674 aaPredicted RBP20.94■□□□□ 0.94
CLN3-229ENST00000567963 TRMT112Q9UI30 125 aaKnown RBP20.94■□□□□ 0.94
CLN3-229ENST00000567963 HCLS1P14317 486 aaPredicted RBP20.93■□□□□ 0.94
CLN3-229ENST00000567963 ANKRD13DQ6ZTN6 518 aa20.93■□□□□ 0.94
CLN3-229ENST00000567963 MBIPQ9NS73 344 aa20.93■□□□□ 0.94
CLN3-229ENST00000567963 ATP6V0A2Q9Y487 856 aa20.93■□□□□ 0.94
CLN3-229ENST00000567963 COL4A5P29400 1685 aa20.92■□□□□ 0.94
CLN3-229ENST00000567963 ABCC4O15439 1325 aa20.92■□□□□ 0.94
CLN3-229ENST00000567963 APAF1O14727 1248 aa20.92■□□□□ 0.94
CLN3-229ENST00000567963 ZNF853P0CG23 659 aa20.92■□□□□ 0.94
CLN3-229ENST00000567963 EPHX2P34913 555 aa20.92■□□□□ 0.94
CLN3-229ENST00000567963 EIF6P56537 245 aaKnown RBP20.92■□□□□ 0.94
CLN3-229ENST00000567963 DUSP27Q5VZP5 1158 aa20.92■□□□□ 0.94
CLN3-229ENST00000567963 LARGE2Q8N3Y3 721 aa20.92■□□□□ 0.94
CLN3-229ENST00000567963 PLBD2Q8NHP8 589 aa20.92■□□□□ 0.94
CLN3-229ENST00000567963 TMX4Q9H1E5 349 aaPredicted RBP20.92■□□□□ 0.94
CLN3-229ENST00000567963 CREBZFQ9NS37 354 aa20.92■□□□□ 0.94
CLN3-229ENST00000567963 SH3TC1Q8TE82 1336 aa20.91■□□□□ 0.94
CLN3-229ENST00000567963 EAPPQ56P03 285 aaPredicted RBP20.91■□□□□ 0.94
CLN3-229ENST00000567963 PNMA8AQ86V59 439 aaPredicted RBP20.91■□□□□ 0.94
CLN3-229ENST00000567963 LAMB2P55268 1798 aa20.91■□□□□ 0.94
CLN3-229ENST00000567963 PASKQ96RG2 1323 aa20.9■□□□□ 0.94
CLN3-229ENST00000567963 BBOX1O75936 387 aa20.9■□□□□ 0.94
CLN3-229ENST00000567963 HYPKQ9NX55 129 aa20.9■□□□□ 0.94
CLN3-229ENST00000567963 ITGBL1O95965 494 aaPredicted RBP20.89■□□□□ 0.94
CLN3-229ENST00000567963 VPS33BQ9H267 617 aa20.89■□□□□ 0.94
CLN3-229ENST00000567963 GJA3Q9Y6H8 435 aa20.89■□□□□ 0.94
CLN3-229ENST00000567963 DDX46Q7L014 1031 aaKnown RBP20.88■□□□□ 0.93
CLN3-229ENST00000567963 SP8Q8IXZ3 490 aa20.88■□□□□ 0.93
CLN3-229ENST00000567963 ZNF428Q96B54 188 aa20.88■□□□□ 0.93
CLN3-229ENST00000567963 ISCA1Q9BUE6 129 aa20.88■□□□□ 0.93
CLN3-229ENST00000567963 IFT57Q9NWB7 429 aa20.88■□□□□ 0.93
CLN3-229ENST00000567963 CLEC11AQ9Y240 323 aa20.88■□□□□ 0.93
CLN3-229ENST00000567963 ADAMTSL1Q8N6G6 1762 aa20.88■□□□□ 0.93
CLN3-229ENST00000567963 GNAI1P63096 354 aa20.88■□□□□ 0.93
CLN3-229ENST00000567963 CALD1Q05682 793 aaKnown RBP20.88■□□□□ 0.93
CLN3-229ENST00000567963 RTFDC1Q9BY42 306 aaPredicted RBP20.88■□□□□ 0.93
CLN3-229ENST00000567963 PPIP5K2O43314 1243 aa20.87■□□□□ 0.93
CLN3-229ENST00000567963 AOC3Q16853 763 aa20.87■□□□□ 0.93
CLN3-229ENST00000567963 NIM1KQ8IY84 436 aa20.87■□□□□ 0.93
CLN3-229ENST00000567963 ATP5J2-PTCD1G3V325 749 aa20.86■□□□□ 0.93
CLN3-229ENST00000567963 GRAPQ13588 217 aa20.86■□□□□ 0.93
CLN3-229ENST00000567963 SUPT20HQ8NEM7 779 aa20.86■□□□□ 0.93
CLN3-229ENST00000567963 GRAPLQ8TC17 118 aaPredicted RBP20.86■□□□□ 0.93
CLN3-229ENST00000567963 SCNN1DP51172 638 aa20.85■□□□□ 0.93
CLN3-229ENST00000567963 DPP8Q6V1X1 898 aaPredicted RBP20.85■□□□□ 0.93
CLN3-229ENST00000567963 CNTROBQ8N137 903 aa20.85■□□□□ 0.93
CLN3-229ENST00000567963 MPNDQ8N594 471 aa20.85■□□□□ 0.93
CLN3-229ENST00000567963 FAM89AQ96GI7 184 aa20.85■□□□□ 0.93
CLN3-229ENST00000567963 TAF1P21675 1872 aa20.85■□□□□ 0.93
CLN3-229ENST00000567963 DDX60Q8IY21 1712 aaKnown RBP20.84■□□□□ 0.93
CLN3-229ENST00000567963 ELL2O00472 640 aaPredicted RBP20.84■□□□□ 0.93
CLN3-229ENST00000567963 LMOD1P29536 600 aaPredicted RBP20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms